Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq35 91.5 6e-13 seq24 87.8 7e-12 >seq35 Length=8009359 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | |||||| | ||||| || || ||||||||||| | || || || || || Sbjct 3771783 GTTACCAACGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCTCAGCGCCAGGCTACG 3771724 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||| || | || || || ||||| || || || || |||||| Sbjct 3771723 AAAGATGCTGGAACTATTGCAGGGCTCAACGTCCTGCGAATCATCAACGAGCCCACAGCA 3771664 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| | || ||||| || Sbjct 3771663 GCTGCCATTGCCTATGGGCT 3771644 >seq24 Length=12378331 Score = 87.8 bits (96), Expect = 7e-12 Identities = 84/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| ||||||| || || | ||||| | || ||||||||||||||| Sbjct 11446904 AAAGCCAAGCCCCATATTCAGGTCGATGTTGGAGGTGGACAGACAAAAACTTTTGCTCCT 11446845 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| | ||||| || || || ||||| ||||||||||| Sbjct 11446844 GAAGAAATTTCTGCAATGGTCCTGACAAAGATGAAGGAAACAGCAGA 11446798 Score = 87.8 bits (96), Expect = 7e-12 Identities = 84/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| ||||||| || || | ||||| | || ||||||||||||||| Sbjct 11447521 AAAGCCAAGCCCCATATTCAGGTCGATGTTGGAGGTGGACAGACAAAAACTTTTGCTCCT 11447462 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| | ||||| || || || ||||| ||||||||||| Sbjct 11447461 GAAGAAATTTCTGCAATGGTCCTGACAAAGATGAAGGAAACAGCAGA 11447415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975175973922224