Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq13 277 2e-69 seq8 84.2 3e-11 >seq13 Length=64724594 Score = 277 bits (306), Expect = 2e-69 Identities = 1028/1597 (64%), Gaps = 32/1597 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || Sbjct 57105415 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCAATGTCGTCCTTGCT 57105474 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| ||||| || || || ||||| | ||||||| | |||||| | Sbjct 57105475 GAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTATCCAC 57105534 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || ||||||| |||||||| ||||| | || || | || | || || || Sbjct 57105535 GGCGCTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGAGGGAC 57105594 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || || |||||||| | Sbjct 57105595 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 57105654 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866 | | | | ||||| || || || | | || || | | || || ||| Sbjct 57105655 TGTCATAGCTCTCTCACCCTCGTACACCTGGACCAGGAC-GCTGCTCTGGTTGTCTGAGT 57105713 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| | || || || | || || || || || | | || | | || Sbjct 57105714 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCGG 57105773 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || || |||| || || |||||||| || || ||||| || | || Sbjct 57105774 TCATCACTCCTCCAGCTGTCTCGATGCCGAGGGACAGAGGGGTAACATCCAACAGCAGCA 57105833 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | || || || || | || ||| | | ||| || ||||| || | || || | Sbjct 57105834 GATCCTGCACGTTCTCAGACTTGTCCCCCATGAGGATAGCAGCTTGTACGGCAGCACCAT 57105893 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || |||||||| ||||| || | || || || ||||| || || || ||||| Sbjct 57105894 AAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTAAGCTCTTTGCCATTGAAGAAATCCT 57105953 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 || || | || || || ||||| || || || || || |||| ||||| || | | Sbjct 57105954 GTAGCAGCTTCTGGATCTTGGGGATGCGGGTAGAGCCCCCCACCAGCACGATCTCCTGGA 57106013 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || |||| ||| | || || || | ||| || || || |||| | || Sbjct 57106014 TCTGGCCCTTGTCGAGCTTGGCATCACGCAGAGCTTTCTCCACCGGCTCCAGAGTGCCAC 57106073 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||| | ||| | || ||||||||||| |||||||| ||||| || ||||| |||| Sbjct 57106074 GGAAGAGGTCAGCATTGAGCTCCTCAAAACGGGCACGGGTTATGGAAGTGTAGAAGTCAA 57106133 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTTC 7343 ||| || | | || ||||| |||||| | | || ||| || || | || | Sbjct 57106134 TGCCCTCAAAAAGAGAGTCAATCTCAATGCTGGCCTG---CGTGGAGGAGCTGAGGGTGC 57106190 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 |||| || | |||||| || || || | || | | || ||| ||| || |||| Sbjct 57106191 GCTTCGCCCTCTCACAAGCTGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCACCGATAT 57106250 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| || || || || || ||||| ||||| | | | || || | Sbjct 57106251 CACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATACGGTTGTCAAAGT 57106310 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | || |||||||| || || || || || || | || || ||||| || || | || | Sbjct 57106311 CCTCCCCACCCAAATGGGTGTCACCAGCCGTGGACTTTACCTCAAAAATCCCATCCTCGA 57106370 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | | | || ||||| || || || || ||||||||||| ||||| |||||| | | Sbjct 57106371 TGGTAAGGATGGACACATCGAAGGTGCCCCCTCCCAGGTCAAAGATGAGCACGTTCTTCT 57106430 Query 7584 CGTC------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | | | | ||||| || || ||||| |||||||| || || || || || | Sbjct 57106431 CTCCAGCCCGGGTTCCCTTCTTGTCCAGGCCGTATGCGATAGCGGCAGCAGTGGGCTCGT 57106490 Query 7638 TAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 | || ||||| | ||| || ||||| | || || | ||||| || || || || || Sbjct 57106491 TGATGATACGCATCACA-TTGAGGCCGGTGATGGTGCCGGCATCCTTGGTGGCCTGGCGC 57106549 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || ||||| ||||| ||||| | ||| |||| | || || || ||| Sbjct 57106550 TGGGAGTCATTGAAGTATGCCGGCACCGTGATGACAGCGTTCTGCACCTTGCACCCTAGA 57106609 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || || || ||||| ||||| || ||||| || ||||| || | | | Sbjct 57106610 TAGGCCTCGGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGAA 57106668 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 | || ||| | || || || | || || | | | |||| || || |||| Sbjct 57106669 GAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACCCTC 57106722 Query 7876 GATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | | | ||||| ||||| || || ||| |||| | |||| Sbjct 57106723 ATTTACCACACGGAAAGGCCAATGCTTCATGTCTGACTGCACCGTGGGGTCATCATACTT 57106782 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | || || || ||||| || ||||| | ||||| |||||||||| ||| ||||| Sbjct 57106783 GCGGCCAATGAGGCGCTTGGCGTCAAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGTT 57106842 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051 ||| || || |||||||| || || || | || || || || || || | |||| | Sbjct 57106843 CTTGGCAGCATCCCCGATGAGCCGCTC---CGTGTCGGTGAAGGCCACATA-GCTGGGTG 57106898 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || || || |||||||| || || || ||||| | ||| || |||| || | Sbjct 57106899 TGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCTACCTTGCCGTGCTGGAAGACACCCA 57106958 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| || || || || || | || || ||||| || Sbjct 57106959 CGCAGGAGTATGTGGTGCCCAGGTCGATGCCGATGGC 57106995 >seq8 Length=115844353 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 115365 CATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAACCCTCT 115424 ||||||| |||||| ||| |||||||||||| |||| | || || | ||| ||||| Sbjct 101499467 CATACCT-CATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCT 101499409 Query 115425 CTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGC 115484 || || | ||||||||| | |||| || || ||||| || ||||| ||| || Sbjct 101499408 TTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGC 101499349 Query 115485 AAAGGCTAATAAACGTTC 115502 |||||||| || |||||| Sbjct 101499348 AAAGGCTACTACACGTTC 101499331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634962679679520