Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq23 145 2e-29 seq27 143 6e-29 >seq23 Length=14943019 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| ||||| ||||| || || || ||||| || | || || Sbjct 1914650 CTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 1914591 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| ||||| || ||| Sbjct 1914590 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCT 1914531 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||| || ||||| |||||| |||||||||||||| | || || |||||| Sbjct 1914530 TCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGG 1914471 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | ||||| || |||| || || ||||| | ||||||| Sbjct 1914470 GTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTT 1914428 Score = 134 bits (148), Expect = 3e-26 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| ||||| ||||| || || || ||||| || | || || Sbjct 1915597 CTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 1915538 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || |||||||| || | || ||||| ||||| || ||| Sbjct 1915537 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCT 1915478 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || |||||| || ||||||||||| ||| || || ||| Sbjct 1915477 TCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCGACCTCA 1915421 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || ||||| | ||||| Sbjct 1915420 AGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1915377 Score = 120 bits (132), Expect = 7e-22 Identities = 162/224 (72%), Gaps = 14/224 (6%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || | ||| || ||||| ||||| || || ||||| || ||| Sbjct 1915369 CTGAGGCGCAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTC----AGA--- 1915317 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || |||||||| |||||||| Sbjct 1915316 -TACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCC 1915258 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || |||||||| || || |||||| |||||||||||||| ||| || ||||| Sbjct 1915257 TCCTTGTCTTGTATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACTTCC 1915201 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||||| || || || || | ||||| Sbjct 1915200 AGAGTGATAGTCTTGCCTGTCAGGGTCTTGACAAAGATCTGCAT 1915157 >seq27 Length=11933672 Score = 143 bits (158), Expect = 6e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || |||||||| || || || ||||| |||| || || Sbjct 8216675 CTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 8216616 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || || ||||| ||||||||| Sbjct 8216615 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCT 8216556 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || ||| ||||||||||||||||| ||| || ||||| Sbjct 8216555 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACTTCC 8216499 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| ||||| ||||| | ||||| Sbjct 8216498 AGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216455 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || |||||||| || || || ||||| |||| || || Sbjct 8215038 CTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 8214979 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| ||||| || ||| Sbjct 8214978 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCT 8214919 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || ||| ||||||||||||||||| ||| || ||||| Sbjct 8214918 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACTTCC 8214862 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| ||||| ||||| | ||||| Sbjct 8214861 AGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8214818 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || |||||||| || || || ||||| |||| || || Sbjct 8216903 CTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 8216844 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| ||||| || ||| Sbjct 8216843 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCT 8216784 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || ||| ||||||||||||||||| ||| || ||||| Sbjct 8216783 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACTTCC 8216727 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| ||||| ||||| | ||||| Sbjct 8216726 AGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216683 Score = 127 bits (140), Expect = 5e-24 Identities = 150/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || |||||||| || || || ||||| |||| || || Sbjct 8216081 CTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 8216022 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || || ||||| ||||||||| Sbjct 8216021 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCT 8215962 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || ||| |||||||| |||||||| ||| |||||| || Sbjct 8215961 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGTTCCACCTCC 8215905 Query 195097 AGGGTAACCGTCTTTCCTGTCA 195118 || || | ||||| || |||| Sbjct 8215904 AGAGTGATGGTCTTGCCAGTCA 8215883 Score = 93.3 bits (102), Expect = 9e-14 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || || ||||| || | || || ||||| ||||||||||| Sbjct 8212950 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 8212891 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 ||||| || || || ||| || || ||||||||||| ||| || || |||||| Sbjct 8212890 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTC---ACTGGGCTCGACCTCAAGG 8212834 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || |||| || || || || | ||||| Sbjct 8212833 GTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 8212793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109176995987276