Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq27 98.7 6e-16 seq23 96.9 2e-15 >seq27 Length=11933672 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 8215044 CCGCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 8214985 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 8214984 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 8214925 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || ||| | || | |||| || ||| || Sbjct 8214924 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACT 8214865 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || || ||||| ||||||||||| Sbjct 8214864 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8214818 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 8216681 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 8216622 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| |||||||| || || ||||| || || | ||||| ||| | || Sbjct 8216621 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 8216562 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || ||| | || | |||| || ||| || Sbjct 8216561 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACT 8216502 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || || ||||| ||||||||||| Sbjct 8216501 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216455 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 8216909 CCGCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 8216850 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 8216849 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 8216790 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || ||| | || | |||| || ||| || Sbjct 8216789 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACT 8216730 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || || ||||| ||||||||||| Sbjct 8216729 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216683 Score = 82.4 bits (90), Expect = 5e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| |||||||| || || ||||| || || | ||||| ||| | || | || |||| Sbjct 8212949 CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCT 8212890 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944 |||| ||||| || || | | || | |||| || ||| || || | ||| | Sbjct 8212889 TGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGA 8212830 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || || || || |||||||||||||||||||| || Sbjct 8212829 TGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATGTT 8212790 >seq23 Length=14943019 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 1915567 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAG 1915508 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || |||||||| ||||| ||||| | Sbjct 1915507 ATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 1915448 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || ||||| || ||||| || Sbjct 1915447 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACG 1915388 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1915387 AAGATCTGCAT 1915377 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/229 (69%), Gaps = 12/229 (5%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||||||| | ||| ||||||||| ||||| ||||| || Sbjct 1915375 CCACCCCTGAGGCGCAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAT 1915316 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | |||| |||||||| || || ||||| || || | ||||||||| | || Sbjct 1915315 AC--------CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 1915264 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 1915263 ATGCCCTCCTTGTCTTGTATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGA 1915206 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || || || || || ||||| |||||||||||||| Sbjct 1915205 CTTCCAGAGTGATAGTCTTGCCTGTCAGGGTCTTGACAAAGATCTGCAT 1915157 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 1914620 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAG 1914561 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || |||||||| || || ||||| || Sbjct 1914560 ATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATTTTGGCCTTGAC--AT 1914503 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | ||| || || | ||| ||||| || ||||| || ||||| | Sbjct 1914502 TCTCAATGGTGTCACTAGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGA 1914443 Query 34969 CAAAGATCTGCATATTC 34985 | ||||||||||| ||| Sbjct 1914442 CGAAGATCTGCATTTTC 1914426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324548820717984