Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq35 111 1e-18 >seq35 Length=8009359 Score = 111 bits (122), Expect = 1e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | |||||| | ||||| ||||| ||||| |||||||| || || || ||||| Sbjct 3771783 GTTACCAACGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCTCAGCGCCAGGCTACG 3771724 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||| || || || || || || || ||||| || || || || Sbjct 3771723 AAAGATGCTGGAACTATTGCAGGGCTCAACGTCCTGCGAATCATCAACGAGCCCACAGCA 3771664 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| || || || Sbjct 3771663 GCTGCCATTGCCTATGGGCTGGACAA 3771638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028162790719720