Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq52 87.8 1e-12 >seq6 Length=157563209 Score = 125 bits (138), Expect = 6e-24 Identities = 143/187 (76%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| ||||||||||||||||| || ||||| ||||||| || Sbjct 107518283 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 107518342 Query 30210 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || ||| |||| ||| ||| ||| |||| || || | ||| || || || | Sbjct 107518343 ACCCTCCTCTCTGCTGCT-GAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCAT 107518401 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| ||||| || || || | ||||||||||||| ||||| || || || || || | Sbjct 107518402 CCCAAATCTTCACGCCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 107518459 Query 30329 ACAGCAG 30335 |||| || Sbjct 107518460 ACAGAAG 107518466 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 30320 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30379 ||| |||||||||||||||||||| || ||||||| || |||||||| |||||||| | Sbjct 107519730 TGATGAACCACAGCAGCTCCTCCAGCACTCCCTTCCAGAACACCCTCTTCGTCGTGAGCA 107519789 Query 30380 GGGGAAACTG 30389 | |||||||| Sbjct 107519790 GCGGAAACTG 107519799 >seq52 Length=59856998 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| || | || || |||||| | | ||| | ||||| || || Sbjct 59217712 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 59217653 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| |||||||||||| ||||||| || ||| Sbjct 59217652 ATGGAGAACCACGTTTTTTTACCCATTATCAGTGCGTTCTGTTTACCT 59217605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408510887981444