Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq27 87.8 1e-12 >seq27 Length=11933672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| |||| | || | |||| |||| ||| Sbjct 8216657 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGC 8216598 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| ||||| || ||||||||||| || || || || || Sbjct 8216597 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 8216538 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | || ||||| || |||| || ||||| || Sbjct 8216537 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTC 8216478 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 8216477 AGGGTTTTCACGAAGATCTGCAT 8216455 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| |||| ||||| || ||||| |||| | ||| ||||| || ||||||||||| | Sbjct 8212949 CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCT 8212890 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 | || || || || || ||| |||| | |||||| | || || ||||| |||| Sbjct 8212889 TGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGA 8212830 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || | || || ||||| ||||||||| Sbjct 8212829 TGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 8212792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396174910409796