Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 132 9e-26 seq48 127 4e-24 seq17 84.2 4e-11 >seq1 Length=120002344 Score = 132 bits (146), Expect = 9e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 ||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 630850 GTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 630791 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || ||||| |||| Sbjct 630790 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 630731 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 630730 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 630688 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || ||||| || ||| ||||| ||| | | ||||||||| |||||| |||||||||| Sbjct 633632 CCCTTGCTGACCGGGGAGCCCTCGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCA 633573 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| ||||||||||||| ||||| || | | |||||| || Sbjct 633572 CAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGGAGCTGA 633513 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 |||| ||| | ||||| | | ||||| | ||| | |||||||| ||||| || Sbjct 633512 GCCTGGGGGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACG 633453 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||||||||| | ||| | | |||| || Sbjct 633452 CCGATGCCGATGGGGCGGTGCCGCCGGTTGGA 633421 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||||||||| | ||| | ||| ||||||||||||||| Sbjct 636620 CTGGAACTCCCCCGAGAGCACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 636561 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| |||||| |||||||| | | || || || Sbjct 636560 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAAATGAGCAGGCT 636501 Query 213038 GTTCCTCACTCCGT 213051 |||||| || |||| Sbjct 636500 GTTCCTGACACCGT 636487 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||| || || |||| ||| || || |||||||||||||| || | ||| || Sbjct 627907 CTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCCCGCTGCTCCTC 627848 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 || | ||| || || || || || |||||||||||| |||||| ||||||| Sbjct 627847 TTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCAGGGCTCCAG 627788 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||||||||||| || || || |||| Sbjct 627787 GTAGATGGCAAAAGCCCCAGGTCTCT 627762 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||||||||| |||||||| ||||| | | ||||| || ||||| | | ||| Sbjct 639768 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGT 639709 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | ||||||||| |||||||||||||||| ||| | || ||||| || || | | || Sbjct 639708 TTTCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTTAGGTCTTCAGGAATCTCAGG 639649 Query 212816 GATGTTCTG 212824 ||||||||| Sbjct 639648 GATGTTCTG 639640 >seq48 Length=6182350 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||| ||||| || || || | | ||||| || || Sbjct 4711872 AGCACCTTCTGCTTGAGCTGGGCGACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCGAGC 4711813 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| |||||||||||||| | ||| || ||||| Sbjct 4711812 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGCCGGGAGATTCGCTCCAGC 4711753 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | |||||||| || | ||| |||||||||||| Sbjct 4711752 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGCTTCCGTTCCGCCTTG 4711693 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 4711692 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 4711660 >seq17 Length=26793321 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026 ||||| | |||||| |||||||||||||| | | |||||| ||||| | | ||| ||| Sbjct 4581386 TCCCAGCGGTTGGCAGAGAAGAGCAGGTGAATGGTGTGGTCCTCCAGGTTCTTCTCCCTC 4581445 Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 ||||||| |||||||||| || || || ||||||||||| Sbjct 4581446 CCCAGGTAGGAGCTGATCAGCTGCCCAATCTCTGTGGTTCTGTC 4581489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931283288939520