Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 102 2e-16 >seq1 Length=120002344 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || |||| || ||||||||| || |||||||| || || || || || Sbjct 627925 CTGGTTGGTTTCCACCCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTC 627866 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 |||| |||||||||||| || |||| ||| ||| |||| |||||||| ||||| Sbjct 627865 CCTGGCCCGCTGCTCCTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTC 627806 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||| |||||||| |||| ||| | ||| || |||| || Sbjct 627805 CAAGTGCCAGGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 627762 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||||| |||| || | | |||||| || || ||||||||||||||||||| Sbjct 630867 CCACCTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 630808 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 630807 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 630748 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 630747 TGCCAGTCTC 630738 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| ||||| || |||||||||||||| | ||| | ||| ||| | || ||||| Sbjct 636623 CACCTGGAACTCCCCCGAGAGCACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGAT 636564 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 | ||||||||||||||||||||| || ||| ||| || |||||||| | | ||||| Sbjct 636563 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAAATGAGCAG 636504 Query 221242 ACTGTT 221247 ||||| Sbjct 636503 GCTGTT 636498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928596008920320