Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq23 93.3 3e-13 seq27 87.8 1e-11 >seq23 Length=14943019 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| || || | | |||||| || ||||| ||||| || || || | || Sbjct 1915555 TTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC 1915496 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || |||||||| |||||||||||||| || ||||| |||||| |||||| || ||| Sbjct 1915495 TGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCA 1915436 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | |||||||| || || || || || || ||||| ||||| || || Sbjct 1915435 CTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTG 1915380 >seq27 Length=11933672 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || ||||| || ||||| |||||||| Sbjct 8212948 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTT 8212889 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || ||| |||||| || ||| || | |||||||| || Sbjct 8212888 GTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 8212829 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| || || || || Sbjct 8212828 GGTCTTACCAGTCAGGGTCTTCACAAAGATCTG 8212796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267260049111344