Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq52 208 9e-49 seq18 158 1e-33 >seq52 Length=59856998 Score = 208 bits (230), Expect = 9e-49 Identities = 650/1002 (65%), Gaps = 6/1002 (1%) Strand=Plus/Minus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | |||| |||| || || |||| |||| || || || ||| | Sbjct 31662700 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCGATA 31662641 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || ||| || || || || || | ||||| ||| ||| ||||||| || |||| Sbjct 31662640 TCAGTGTCAAACTTGTTAGCAAATAAGTGGTG---GTTTCGTAACATCCAGTTCAAGTCT 31662584 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| ||||| | || || || |||| || ||||| | || Sbjct 31662583 CCTACTCCAAAAACACAGACAGAACGAACATGAACTCCACTGCACGGTGGGTAGGGTGCG 31662524 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | |||||||||||| ||||||||||||| ||||||||||| | || | |||| Sbjct 31662523 CCTTTGGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATG 31662464 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGT 160331 || || ||| | |||| | | || ||||| || || | || || | ||| Sbjct 31662463 TCAGACACGTCAAACTTGTTACTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCTGA 31662404 Query 160332 AGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCT 160391 | || |||||||||| || || |||||||| || || || | ||| || ||||||| Sbjct 31662403 ATTGTTGCCCACAGGTACTCATCTGGGCTGTATGTATCTTTTGCCCACTCAATGAACTTA 31662344 Query 160392 CCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCG 160451 ||| |||| || || | || || |||| | || ||||| || || Sbjct 31662343 AGTATTTCGCTGTTTTCTAGTACATATTCTACAAAGCTTCTGCTAACTACAAAATAGGCA 31662284 Query 160452 CTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGAC 160511 ||||| || || | || || | ||| || | |||||| || ||||| Sbjct 31662283 CTGCCAGAAAAAACTGGAGTGCTGAGAGGTGGTAGTTTTTTGTCTATGCCTGTGTTCTTT 31662224 Query 160512 ACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATG 160571 | || | | | | | || | || |||||||| || || | ||||| Sbjct 31662223 ATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATT 31662164 Query 160572 CGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGG 160631 ||| || || | ||||| | || | || | ||| | | || || || || || Sbjct 31662163 TTTTCTGTTTCCAAGCTGTTTTCTCCCTTAAGGGCTTTTAATTTCTCCACTATTTCGTGG 31662104 Query 160632 TTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTC 160691 || ||||| | |||||||| ||||||| | |||||| | ||| ||||| || | || Sbjct 31662103 TTGGTCTTTATAGGAAAGTCCATACCGCATAGGTTTATTAGGTATTTCCAGTTTGAACTT 31662044 Query 160692 AGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTAC 160751 || || || ||||||| ||||| ||||||||||| | |||||| ||||| || Sbjct 31662043 CTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATAT 31661984 Query 160752 ACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACC 160811 || || |||||| | |||| | |||||| ||||| ||||| ||||| |||||| Sbjct 31661983 ACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGACACTATTCCCTTA 31661924 Query 160812 ACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTG 160870 || | ||| || || || | | |||| || || || | ||| || | ||||| Sbjct 31661923 ACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTATCTACATGAATGCAGTAAAAATTCTG 31661865 Query 160871 AGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGAT 160930 || || ||||| | || || | || || | |||||| || || |||| ||||| || Sbjct 31661864 TGGAGCATAGATTGATCTCAGAAGTCTATCAAGCATCTCAATTTTGTGATAAATCACTAT 31661805 Query 160931 AGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCG 160990 ||||| || || ||||| | | || || ||| || | | | | | ||| || | Sbjct 31661804 TGAGTAAGCAATTGGAAATGCTGCTTCTTCATTACTGAGAGGCTCCATAATGTATTTCCT 31661745 Query 160991 CGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||||| | || | |||| || |||||||| ||||| Sbjct 31661744 AGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 31661703 >seq18 Length=21346708 Score = 158 bits (174), Expect = 1e-33 Identities = 606/940 (64%), Gaps = 20/940 (2%) Strand=Plus/Minus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 ||||| |||| ||||| ||||| || || || || ||||| |||| || || Sbjct 18005096 CAGCGCCTTGTGGCGCAGGTGTTCCTCGAGGCACTGCACGGCCGCATCGTCCACCTCGGG 18005037 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 |||||| || || || || |||||||| | ||| || |||||| | ||||| || Sbjct 18005036 GTCGAACTTGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGAACGTCGCCCAC 18004980 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 |||| | ||||||| || || ||| |||| |||| |||||||| | || || || Sbjct 18004979 CCCGTAGACGCAGATGGTGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTT 18004920 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | ||| || || |||||||||||| || | | || | ||| | |||||| || Sbjct 18004919 GCGAATGTCCCCCTCCAGGTACTGCCACTTGACCAGGCGGGGAAGCGCGTTCATGTCCGA 18004860 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | | | | || | || |||| || | || || ||||| ||||| || | ||||| Sbjct 18004859 GAGCTGGAACTTATCGCTCGGGGGCGCGCCCCCCGGCACGCCCGGCATGCGGTTCAGGGT 18004800 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 |||||| | ||| || ||||||||||| ||||||| ||||| || | |||| || | Sbjct 18004799 GGCCCAGACGTGCTCATCGGGGCTGTAGCTGTCCTTGGACCACTCGAGGAAC-CTTTGTG 18004741 Query 160397 TAACCTG--TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTG 160454 | | || || || |||| ||| || | || || | |||||||||| Sbjct 18004740 CCGCGGGGTTCTCGAAG-ACGTACTGCACGAAGTCGCGCGTGACCGCGTTGTACGCGCTG 18004682 Query 160455 CCGGAGAATAT-CGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACAC 160513 || | ||| || |||| || || |||| ||| | ||| | ||| ||| Sbjct 18004681 CCCGTGAACATGGGGTAGTTGT-GGGGTGGCGGCAATTTCTTCTGGGCAGTGCGAGA--- 18004626 Query 160514 CACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCG 160573 | || ||| ||| | ||| | |||||| | | |||| |||| | || Sbjct 18004625 GATGCCCTTCCCCACCTCGTAGTGGAACTTCCAGCGCTGCTCCTTG-GCGGCCGAGGGCC 18004567 Query 160574 T-TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGT 160632 | || | ||| | |||||| || | ||| | |||| | ||| ||||| || Sbjct 18004566 TCTCTGACTCCACGCTGTTGTGGCCCTGCAGCAGCTGCAGCGCCCGGACCATCTCGGCGT 18004507 Query 160633 TCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCA---TTTCGCGC 160689 | ||||||| || |||||||| ||||| ||| || | ||| ||| || || Sbjct 18004506 TGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGATGAGGTAGCGCCACGGCACCGGGC 18004447 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 || | |||||||| |||||| || | || ||||||| ||| ||||| |||| Sbjct 18004446 TC---TGCAGCAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGGCCAGGCGGCGT 18004390 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || ||| | || || |||||||| |||||||| ||| || | |||| || Sbjct 18004389 AGACCACGCTTTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCAGCGATGGCCC 18004330 Query 160810 CCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869 ||| ||| ||| || || | |||||| || ||||| || | |||| Sbjct 18004329 GCACAGCCTCCTGGAAGGCGGCCGGGGCTTTGCTGTCCACATGGACGCAGTAGACATTCT 18004270 Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929 | || ||||| | || | || | || ||| ||||| || || || || ||||| || | Sbjct 18004269 GGGGGGCGTACACGGAGCGCAGGAGCCGCTCAAACATGTCGATTTTGTGGTGGATGACCA 18004210 Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | |||||||| || || ||||| |||||| | ||||| Sbjct 18004209 TGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGGCTCAG 18004170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577064591837280