Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq13 298 7e-76 seq27 179 5e-40 seq35 104 3e-17 seq16112 102 1e-16 seq24 100 4e-16 seq48 87.8 2e-12 >seq13 Length=64724594 Score = 298 bits (330), Expect = 7e-76 Identities = 1038/1597 (65%), Gaps = 37/1597 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || ||||| | || | | Sbjct 57106995 GCCATCGGCATCGACCTGGGCACCACATACTCCTGCGTGGGTGTCTTCCAGCACGGCAAG 57106936 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 |||||||| ||| | || ||||| || ||||| || || || || || ||||| || Sbjct 57106935 GTAGAGATCATCGCCAACGACCAGGGTAACCGCACCACACCCAGCTATGTGGCCTTCACC 57106876 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || ||| | || ||||| || || || ||| ||| |||||||| | ||| Sbjct 57106875 GACACGGAGCGGCTCATCGGGGATGCTGCCAAGAACCAGGTAGCAATGAACCCCACCAAC 57106816 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||||||||| ||||| || ||||| ||||||| | || | || || Sbjct 57106815 ACCATCTTTGACGCCAAGCGCCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGTCA 57106756 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| | ||| ||| || || || || || ||||| | | | | Sbjct 57106755 GACATGAAGCATTGGCCTTTCCGTGTGGTAAA---TGAGGGTGGCAAGCCCAAGGTGCAG 57106699 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| ||| | || |||| || || || || |||||| | Sbjct 57106698 GTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGCT 57106640 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | ||||||||||||| ||| || | | || |||| || ||| | | || || Sbjct 57106639 CACCAAGATGAAGGAGATTGCCGAGGCCTATCTAGGGTGCAAG-GTGCAGAACGCTGTCA 57106581 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || || || ||||||| ||| || || || ||||| || ||||| || | | | Sbjct 57106580 TCACGGTGCCGGCATACTTCAATGACTCCCAGCGCCAGGCCACCAAGGATGCCGGCACCA 57106521 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | || ||||| || || || || || || || || || Sbjct 57106520 TCACCGGCCTCAA-TGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCTATCGCATAC 57106462 Query 195836 GGTCTGGACAAGAAC--AA----GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || ||||||||||| || || | ||| || || || | |||||||| || || Sbjct 57106461 GGCCTGGACAAGAAGGGAACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACCTGGGA 57106402 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || || ||||| || | || | || || | ||| || || || |||||| | Sbjct 57106401 GGGGGCACCTTCGATGTGTCCATCCTTACCATCGAGGATGGGATTTTTGAGGTAAAGTCC 57106342 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008 || |||||||| || ||| | ||||| || || || || ||| | | || ||| Sbjct 57106341 ACGGCTGGTGACACCCATTTGGGTGGGGAGGACTTTGACAACCGTATGGTGAACCACTTT 57106282 Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068 || || || ||| || ||| | ||| ||||| ||| || | || | | Sbjct 57106281 GTG-GAAGAATTCAAGCGCAAGCACAAGCGTGATATCGGTGGCAACAAGCGAGCGGTGAG 57106223 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTC---TCTTCTACGGCTCAAAC 196125 ||||| | || || ||||| | || || || || ||| || || ||| || | Sbjct 57106222 GCGGCTGCGCACAGCTTGTGAGAGGGCGAAGCGCACCCTCAGCTCCTCCACG---CAGGC 57106166 Query 196126 AATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGC 196185 | |||||||||| || | ||||| || ||||||||||| || | || |||||||| Sbjct 57106165 CAGCATTGAGATTGACTCTCTTTTTGAGGGCATTGACTTCTACACTTCCATAACCCGTGC 57106106 Query 196186 ACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT 196245 |||||||| ||| | || |||| | || | | |||| || || || ||| Sbjct 57106105 CCGTTTTGAGGAGCTCAATGCTGACCTCTTCCGTGGCACTCTGGAGCCGGTGGAGAAAGC 57106046 Query 196246 ACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 || ||||| || ||| | || ||| || | | || || || || ||||| || || Sbjct 57106045 TCTGCGTGATGCCAAGCTCGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGGGGCTC 57105986 Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAA 196365 ||||| || || ||||| || || |||| ||||||||| ||||| | || Sbjct 57105985 TACCCGCATCCCCAAGATCCAGAAGCTGCTACAGGATTTCTTCAATGGCAAAGAGCTTAA 57105926 Query 196366 CAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCT 196425 ||| | |||||||| ||||| || || ||||||||||| ||||| || |||||||| Sbjct 57105925 CAAGAGCATCAACCCTGATGAGGCTGTGGCTTATGGTGCTGCCGTACAAGCTGCTAT--C 57105868 Query 196426 CTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 |||| | | ||||| | | ||||| || ||||| ||||| | |||||| | || | Sbjct 57105867 CTCATG-GGGGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGTTGGATGTTACCCCTCT 57105809 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 ||||| || | || ||||| || || || ||||| | || | | ||||| || Sbjct 57105808 GTCCCTCGGCATCGAGACAGCTGGAGGAGTGATGACCGCTCTCATCAAGCGCAACACCAC 57105749 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTC 196601 || || || || | || ||| | || || || || || || | || | || | Sbjct 57105748 CATCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGTCC 57105690 Query 196602 ATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAA 196658 | || || || || | |||| ||| || ||| ||||||| | | || || | Sbjct 57105689 TGGTCCAGGTGTACGAGGGTGAGAGAGCT---ATGACAAGGGATAACAACTTGCTGGGCA 57105633 Query 196659 CTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCT 196718 || || | || || || || | |||||||| || || || ||||| | || | Sbjct 57105632 AGTTTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCTCAGATCGAGGTCACTT 57105573 Query 196719 TCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAAT 196778 | || || || || ||||| || || || |||| || | ||| ||| | || || Sbjct 57105572 TTGACATCGATGCCAATGGTATCCTGAATGTCAGCGCCGTGGATAAGAGCACGGGTAAGG 57105513 Query 196779 CTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTA 196838 | ||||| || |||||||||||||| || || ||||| || ||||| |||| Sbjct 57105512 AGAACAAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGACGACATTGACCGTA 57105453 Query 196839 TGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 |||| ||||| || || ||||||| | ||| || || Sbjct 57105452 TGGTGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 57105416 >seq27 Length=11933672 Score = 179 bits (198), Expect = 5e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||||||||| ||||| || || |||||||| || || ||| | Sbjct 8216455 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8216514 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || |||||||| || || |||||||||||||| || |||||| Sbjct 8216515 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 8216574 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||||||||| ||||| | || |||||| Sbjct 8216575 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 8216634 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || ||||| || || | || ||||||| Sbjct 8216635 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 8216681 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||||||||| ||||| || || |||||||| || || ||| | Sbjct 8214818 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8214877 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || |||||||| || || |||||||| || || || || ||| Sbjct 8214878 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 8214937 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||||||||| ||||| | || |||||| Sbjct 8214938 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 8214997 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || ||||| || || Sbjct 8214998 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 8215029 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||||||||| ||||| || || |||||||| || || ||| | Sbjct 8216683 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8216742 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || |||||||| || || |||||||| || || || || ||| Sbjct 8216743 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 8216802 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||||||||| ||||| | || |||||| Sbjct 8216803 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 8216862 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || ||||| || || Sbjct 8216863 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 8216894 Score = 152 bits (168), Expect = 7e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 171877 AAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAAC 171936 || ||||| ||||| || || ||||| || ||||| || | ||||| ||||| ||| Sbjct 8215876 AAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGTGACACCATCGAGAAC 8215935 Query 171937 ATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTT 171996 | || |||||||| || || |||||||||||||| || |||||||| | || || ||| Sbjct 8215936 GTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTT 8215995 Query 171997 GCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCT 172056 ||||| || ||||| ||||||||||| ||||| | || |||||| | || |||||||| Sbjct 8215996 GCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCC 8216055 Query 172057 ACTCTACACCTTGTTCT 172073 || || ||||| || || Sbjct 8216056 ACCCTGCACCTGGTGCT 8216072 Score = 136 bits (150), Expect = 5e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| ||||| ||| | Sbjct 8212793 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 8212852 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||||||||| || |||||| Sbjct 8212853 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 8212912 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGG 172019 || | || || |||||||| || ||||| |||||||| Sbjct 8212913 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGG 8212950 >seq35 Length=8009359 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 ||||| |||||||| || || || |||| ||| || || || ||||| || || || ||| Sbjct 3771774 GCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCTCAGCGCCAGGCTACGAAAGATGCT 3771715 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | ||||||| || || ||| || |||| ||||| || || ||||| ||||| ||| Sbjct 3771714 GGAACTATTGCAGGGCTCAACGTCCTGCGAATCATCAACGAGCCCACAGCAGCTGCCATT 3771655 Query 195830 GCTTATGGTCTGGACAAGAA 195849 || ||||| ||||||||||| Sbjct 3771654 GCCTATGGGCTGGACAAGAA 3771635 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| | || |||||| | || || || || || ||||||||||| | || ||| Sbjct 3772704 AGCTGTCGGGATCGATCTTGGTACCACCTATTCCTGTGTTGGTGTTTTCCAGCATGGGAA 3772645 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 || ||||| || | |||||||| || ||||| || || || || || ||||| || Sbjct 3772644 GGTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCAC 3772585 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||| | || | ||| | || ||||| || || || ||| || |||||||| | ||| Sbjct 3772584 AGACACAGAGAGGCTCATCGGTGATGCTGCCAAGAACCAGGTGGCCATGAACCCAACCAA 3772525 Query 195478 TACTGTCTTTG 195488 || ||||||| Sbjct 3772524 CACAGTCTTTG 3772514 >seq16112 Length=300 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| ||| | Sbjct 268 ATGCAGATCTTCGTGAAAACCCTGACGGGCAAAACCATCACCCTCGAGGTGGAGCCCAAT 209 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | ||||||||||| || || |||||||| Sbjct 208 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 165 >seq24 Length=12378331 Score = 100 bits (110), Expect = 4e-16 Identities = 128/175 (73%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGA-ACAAGGACGAAGATAAAAATGTAT 195872 |||||| ||||| ||||||||||| |||||||||| | |||| ||| || || | Sbjct 11446312 AACAGCTGCTGCCATTGCTTATGGACTGGACAAGAGAGAAGG----AGAGAAGAACATCC 11446257 Query 195873 TGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTA 195932 | | ||||| || || ||||| || || ||||| || || |||| ||||| ||| Sbjct 11446256 TTGTATTTGACCTGGGCGGTGGAACTTTCGATGTGTCCCTCCTCACGATTGACAATGGAG 11446197 Query 195933 TATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || ||||| ||||||| |||||| ||||| || ||||| ||||| || || Sbjct 11446196 TCTTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 11446142 >seq48 Length=6182350 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| ||| | Sbjct 4559198 ATGCAGATCTTCGTGAAAACCCTGACGGGCAAAACCATCACCCTCGAGGTGGAGCCCAAT 4559139 Query 171922 GACACAATCGATAACATCAAAGCCAAGA 171949 ||||| ||||| ||| | |||||||||| Sbjct 4559138 GACACCATCGAGAACGTGAAAGCCAAGA 4559111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657686191556160