Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq547 87.8 5e-12 >seq547 Length=18205 Score = 87.8 bits (96), Expect = 5e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || || || || || || | || || ||||| || |||||||| | ||| Sbjct 18088 GTCTTCACGGCCGTGTCGATCAGCCCCTCGCGCCCGCCCATGGCGTGGAAGAAGAACTCG 18029 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 || ||| ||||| | | ||||| |||| ||||| || || |||||| | Sbjct 18028 GTGGG-CGTCAGCCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGGGCCGTA 17970 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| | ||||| ||||| |||| || || ||||| | ||||| ||||| || Sbjct 17969 GTCGTCCTTGATGAAGTGGGGCAGCGTCCGGTGCTTGAAGCCGAAGGGGATTCGCTTCCC 17910 Query 302799 ATCAACGTTCTGCTGTCCCA 302818 || ||||||||||| |||| Sbjct 17909 CTCCACGTTCTGCTGCCCCA 17890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471413517997236