Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq27 120 3e-22 seq23 105 6e-18 >seq27 Length=11933672 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || || || || || || || ||||| || ||| Sbjct 8214817 GATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAG 8214876 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| |||||||| ||||| || || Sbjct 8214877 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCA 8214936 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 8214937 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8214996 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || ||| ||||| |||| Sbjct 8214997 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 8215032 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || || || || || || || ||||| || ||| Sbjct 8216682 GATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAG 8216741 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| |||||||| ||||| || || Sbjct 8216742 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCA 8216801 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 8216802 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8216861 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || ||| ||||| |||| Sbjct 8216862 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 8216897 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || || || || || || || ||||| || ||| Sbjct 8216454 GATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAG 8216513 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 8216514 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 8216573 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 8216574 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 8216633 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || ||| ||||| |||| Sbjct 8216634 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 8216669 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || || || || || || ||| Sbjct 8212793 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 8212852 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 8212853 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 8212912 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || | |||||||||| || || |||||||| ||| Sbjct 8212913 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGAT 8212948 >seq23 Length=14943019 Score = 105 bits (116), Expect = 6e-18 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1915377 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1915436 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| |||||||| ||||| || || Sbjct 1915437 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 1915496 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | |||| || || ||| Sbjct 1915497 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1915556 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || ||||| ||||| || ||| | || |||| | | || | | |||||||||| Sbjct 1915557 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAGGGGTG--GTAACTGAGCCA 1915614 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || ||||| || || ||||| || ||| Sbjct 1915157 ATGCAGATCTTTGTCAAGACCCTGACAGGCAAGACTATCACTCTGGAAGTCGAGCCCAGT 1915216 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| || || || || || || || Sbjct 1915217 GACACCATTGAGAATGTCAAGGCCAAGATACAAGACAAGGAGGGCATTCCCCCAGACCAG 1915276 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | || || || ||| Sbjct 1915277 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGAT--------GGTATCTGACTACAAC 1915328 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||||||||| |||| Sbjct 1915329 ATCCAGAAAGAATCCACCCTGCACTTGGTGCTGCG 1915363 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 1914430 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCTAGT 1914489 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||| |||||||| ||||| || || Sbjct 1914490 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 1914549 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 1914550 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1914609 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || ||||| ||||| || ||| | || |||| | | || | | |||||||||| Sbjct 1914610 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAGGGGTG--GTAACTGAGCCA 1914667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449777094927840