Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq23 129 5e-25 >seq23 Length=14943019 Score = 129 bits (142), Expect = 5e-25 Identities = 165/227 (73%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||||||||| || || ||||||||||| || ||||| || || | Sbjct 1915375 CCACCCCTGAGGCGCAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAG-- 1915318 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 || | ||| || || || ||||||||| | |||| || ||||| || || ||| Sbjct 1915317 AT------ACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 1915264 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||||| || |||||| | || | |||||| | || ||| Sbjct 1915263 ATGCCCTCCTTGTCTTGTATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACT 1915204 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| ||||| || | ||| || ||||| |||||||| Sbjct 1915203 TCCAGAGTGATAGTCTTGCCTGTCAGGGTCTTGACAAAGATCTGCAT 1915157 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||||| || | || || || || || || || ||||| || || | Sbjct 1914656 CCACCCCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGAC 1914597 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || ||||||||| | |||| || ||||| || || || Sbjct 1914596 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1914537 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| |||||| | || | |||||| | | || || Sbjct 1914536 ATTCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACC 1914477 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || ||||| || | ||| || || || ||||||||||| Sbjct 1914476 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 1914427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385118598561348