Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq23 170 4e-37 seq27 140 6e-28 seq8 118 2e-21 >seq23 Length=14943019 Score = 170 bits (188), Expect = 4e-37 Identities = 166/215 (77%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || |||||||| || ||||||||||| || || || ||||||| || Sbjct 1915363 CGCAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGATA--------CCA 1915312 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || || || || ||||| || || || ||||| Sbjct 1915311 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 1915252 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || ||||| ||||| || ||| | || || ||||||| ||| || Sbjct 1915251 TCTTGTATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATA 1915192 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||||| ||||| ||||| |||||||| Sbjct 1915191 GTCTTGCCTGTCAGGGTCTTGACAAAGATCTGCAT 1915157 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | ||||| || | ||||||||| || || ||||| || || || |||| Sbjct 1914658 TACCACCCCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAG 1914599 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || ||||||||||| || || || || || |||| Sbjct 1914598 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 1914539 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || || || || || ||||| ||||| || ||| |||| || | Sbjct 1914538 GGATTCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGA 1914479 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || |||||||| |||| ||||| || || ||||||||| Sbjct 1914478 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATT 1914429 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | ||||| || | ||||||||| || || ||||| || || || |||| Sbjct 1915605 TACCACCCCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAG 1915546 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || ||||| ||||| || || || || || |||| Sbjct 1915545 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAG 1915486 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| || || ||||||||||| || ||| | || || | Sbjct 1915485 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGA 1915426 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| |||| ||||| || || |||||||| Sbjct 1915425 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1915377 >seq27 Length=11933672 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || || || | | || Sbjct 8215032 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 8214973 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || || || || || ||||| ||||||||||| Sbjct 8214972 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTG 8214913 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || ||||| || ||| | || || ||||||| || || Sbjct 8214912 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 8214853 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| || || || || |||||||| Sbjct 8214852 GTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8214818 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || || || | | || Sbjct 8216669 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 8216610 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || || || |||||||| || || |||||||| Sbjct 8216609 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 8216550 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || ||||| || ||| | || || ||||||| || || Sbjct 8216549 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 8216490 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| || || || || |||||||| Sbjct 8216489 GTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216455 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || || || | | || Sbjct 8216897 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 8216838 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || || || || || ||||| ||||||||||| Sbjct 8216837 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTG 8216778 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || ||||| || ||| | || || ||||||| || || Sbjct 8216777 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 8216718 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| || || || || |||||||| Sbjct 8216717 GTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216683 Score = 131 bits (144), Expect = 3e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || || || | | || Sbjct 8216075 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 8216016 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || || || |||||||| || || |||||||| Sbjct 8216015 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 8215956 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || ||| | ||||| || |||| ||| || Sbjct 8215955 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATG 8215896 Query 82776 GTCTTGCCTGTCAACGTCTT 82795 |||||||| |||| ||||| Sbjct 8215895 GTCTTGCCAGTCAGGGTCTT 8215876 Score = 123 bits (136), Expect = 5e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || || || ||||||||||| || || || |||||||| || || |||||| Sbjct 8212950 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 8212891 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || || ||||| || || ||||||||||| || ||| | || || || || | || Sbjct 8212890 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 8212831 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || |||| ||||| ||||| |||||||| Sbjct 8212830 ATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 8212793 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||||||| || || ||||| || || || || || || | | ||| Sbjct 8216441 CGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCTGACAGGGTACGACCA 8216382 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| || || || || || || || || || ||||||||||| Sbjct 8216381 TCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTG 8216322 Query 82716 TCTTGAATCTTTGCTTTTACATT 82738 || || ||||| || || ||||| Sbjct 8216321 TCCTGGATCTTGGCCTTCACATT 8216299 >seq8 Length=115844353 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | || ||||| || ||||| || ||||| || || ||||| Sbjct 83074991 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 83075050 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | ||||| ||||| ||||| || ||||| Sbjct 83075051 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCACGTCTATCACCATTTCACCATGTTC 83075110 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 83075111 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 83075153 Score = 100 bits (110), Expect = 6e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| |||||||||||||| ||||| | || || ||||| |||||||| | |||||||| Sbjct 83077387 AGCTTTTTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTATTATGG 83077446 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || ||||| |||| ||| | ||||| | |||||||| || ||| | || || Sbjct 83077447 ATTAGCAGCTTGTGGCCCTAAATTTCAGAAGTACCTGTGGTGGAAACGATATTTGACCAT 83077506 Query 60430 AATGCAATTGTTA 60442 | |||||||| || Sbjct 83077507 ATTGCAATTGGTA 83077519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981557643024092