Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq27 145 7e-30 seq23 131 2e-25 seq16112 84.2 2e-11 >seq27 Length=11933672 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 8215015 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 8214957 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| |||||||| ||||||||||| |||||| || Sbjct 8214956 CAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCT 8214897 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 8214896 TCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGG 8214837 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 8214836 TTTTCACGAAGATCTGCAT 8214818 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 8216880 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 8216822 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| |||||||| ||||||||||| |||||| || Sbjct 8216821 CAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCT 8216762 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 8216761 TCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGG 8216702 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 8216701 TTTTCACGAAGATCTGCAT 8216683 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 8216652 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 8216594 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || || |||||||||||||| |||||| || Sbjct 8216593 CAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 8216534 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 8216533 TCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGG 8216474 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 8216473 TTTTCACGAAGATCTGCAT 8216455 Score = 104 bits (114), Expect = 2e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 8216058 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 8216000 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || || |||||||||||||| |||||| || Sbjct 8215999 CAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 8215940 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||| ||||| || | |||| ||| ||||| ||||| | Sbjct 8215939 TCACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGG 8215880 Query 133642 TTTT 133645 | || Sbjct 8215879 TCTT 8215876 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || |||| |||||| || || || |||||||||||| Sbjct 8212947 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 8212888 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | |||| ||||| ||||||| || || | ||||| | Sbjct 8212887 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 8212828 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || ||||| || || || || ||||||||| Sbjct 8212827 GTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 8212792 >seq23 Length=14943019 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || || | | | || || ||||||||||| Sbjct 1915573 GTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAGCTGCTTGCC 1915515 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| |||||||| ||||||||||| |||||| ||| Sbjct 1915514 AGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTT 1915455 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 1915454 GACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 1915395 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1915394 CTTGACGAAGATCTGCATG 1915376 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || || | | | || || ||||||||||| Sbjct 1914626 GTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAGCTGCTTGCC 1914568 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| |||||||| ||||||||||| ||| || ||| Sbjct 1914567 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATTTTGGCCTT 1914508 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | ||||| || || | ||||| ||| ||||| ||||| || Sbjct 1914507 GACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 1914448 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1914447 CTTGACGAAGATCTGCAT 1914430 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| |||||||| || ||||| || || || | || || ||| Sbjct 1915354 AAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAG--AT-----ACCA-TCTTCCAGC 1915303 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| ||||||||| || || ||||| |||||||| ||| Sbjct 1915302 TGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGTATC 1915243 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||| ||||||| || || | |||| || ||||| Sbjct 1915242 TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGTCTTGCCT 1915183 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || || || ||||||||| Sbjct 1915182 GTCAGGGTCTTGACAAAGATCTGCATG 1915156 >seq16112 Length=300 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| |||||| || | | ||| | ||||| |||||||||| ||| Sbjct 165 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 224 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| ||||||||| ||||| ||||| ||||| |||||||| Sbjct 225 AGGGTGATGGTTTTGCCCGTCAGGGTTTTCACGAAGATCTGCAT 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483291315738720