Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq18 113 5e-20 >seq18 Length=21346708 Score = 113 bits (124), Expect = 5e-20 Identities = 236/347 (68%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || |||||||| |||||||| | ||| ||||||||||||||| || || | || Sbjct 18004522 CGGACCATCTCGGCGTTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGATGAGGTAG 18004463 Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 |||| || | | || | | ||| ||||| | ||||| || |||||||| | || Sbjct 18004462 CGCCACGGCAC-CGGGCTCTGCAGCAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCG 18004404 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| | ||||| || ||||| |||| | |||| || ||||| ||| ||| || Sbjct 18004403 GGGCCAGGCGGCGTAGACCACGCTTTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCA 18004344 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGT 162876 | | | || || ||| ||| ||| | | || ||||| || || || || Sbjct 18004343 GGCAGCGATGGCCCGCACAGCCTCCTGGAAGGCGGCCGGG--GCTTTGCTGTCCACATGG 18004286 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 |||||||| | |||||| |||||||| | || | ||| | | ||| ||||| || || Sbjct 18004285 ACGCAGTAGACATTCTGGGGGGCGTACACGGAGCGCAGGAGCCGCTCAAACATGTCGATT 18004226 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| | || || || || || ||||||||||| ||||||| Sbjct 18004225 TTGTGGTGGATGACCATGGAGTAGGCGATGGGGAACTCCTCCTCCTC 18004179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578277066988800