Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq27 102 2e-16 seq23 86.0 1e-11 >seq27 Length=11933672 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 206183 GCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAAT 206242 |||| || || || || || || |||||| |||| |||||| |||||| |||| Sbjct 8215874 GCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGTGACACCATCGAGA 8215933 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||| ||||| || || || ||||| ||| || || || || || |||| Sbjct 8215934 ACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCT 8215993 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || || |||||| ||||||||||| | || || |||| |||||| ||||||| |||| Sbjct 8215994 TTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGT 8216053 Query 206363 CTACTCTTCACCTTGT 206378 | || || ||||| || Sbjct 8216054 CCACCCTGCACCTGGT 8216069 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| ||||||| || |||||| | || Sbjct 8214833 AAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGTGACACCATTGAGAAC 8214892 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || |||||||| || ||| || || || ||||| Sbjct 8214893 GTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAGAGGCTGATCTTT 8214952 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||||||| | || || |||| |||||| ||||||| ||||| Sbjct 8214953 GCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCC 8215012 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 8215013 ACCCTGCACCTGGT 8215026 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| ||||||| || |||||| | || Sbjct 8216698 AAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGTGACACCATTGAGAAC 8216757 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || |||||||| || ||| || || || ||||| Sbjct 8216758 GTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAGAGGCTGATCTTT 8216817 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||||||| | || || |||| |||||| ||||||| ||||| Sbjct 8216818 GCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCC 8216877 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 8216878 ACCCTGCACCTGGT 8216891 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| ||||||| || |||||| | || Sbjct 8216470 AAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGTGACACCATTGAGAAC 8216529 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || || || || || ||||| Sbjct 8216530 GTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTT 8216589 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||||||| | || || |||| |||||| ||||||| ||||| Sbjct 8216590 GCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCC 8216649 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 8216650 ACCCTGCACCTGGT 8216663 >seq23 Length=14943019 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||| ||||| ||||||| || ||||||| || || | ||||||||| Sbjct 1915585 ACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 1915526 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || |||||||| |||| Sbjct 1915525 AGCTGCTTGCCAGCGAAGATCAGCC 1915501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181496335531188