Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq27 116 3e-21 seq23 107 2e-18 >seq27 Length=11933672 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 8215009 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 8214950 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | | ||||||||| |||||| ||||| | Sbjct 8214949 GATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 8214890 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || |||| ||||| || || || |||| |||||||| Sbjct 8214889 CTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 8214830 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 8214829 GAAGATCTGCAT 8214818 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 8216646 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 8216587 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | Sbjct 8216586 GATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 8216527 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || |||| ||||| || || || |||| |||||||| Sbjct 8216526 CTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 8216467 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 8216466 GAAGATCTGCAT 8216455 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 8216874 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 8216815 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | | ||||||||| |||||| ||||| | Sbjct 8216814 GATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 8216755 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || |||| ||||| || || || |||| |||||||| Sbjct 8216754 CTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 8216695 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 8216694 GAAGATCTGCAT 8216683 Score = 109 bits (120), Expect = 5e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 8216052 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 8215993 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | Sbjct 8215992 GATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 8215933 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | ||||| || | ||||||||||| ||||| || || || |||| Sbjct 8215932 CTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGTCTTGCCAGTCA 8215883 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| |||| || |||||| || | |||| || |||||| Sbjct 8212947 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 8212888 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| ||||| | || | | ||||| || | || ||||| | ||||| Sbjct 8212887 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 8212828 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| |||| || |||||||| |||||||| Sbjct 8212827 GTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 8212793 >seq23 Length=14943019 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 1915568 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAA 1915509 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | | ||||||||| |||||| ||| | | | Sbjct 1915508 GATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 1915449 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || ||||| | ||||| || || ||||||| || || || Sbjct 1915448 TTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 1915389 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1915388 GAAGATCTGCAT 1915377 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 1914621 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAA 1914562 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | | ||||||||| ||| || ||| | | | Sbjct 1914561 GATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATTTTGGCCTTGACATT 1914502 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || ||||||| || || || Sbjct 1914501 CTCAATGGTGTCACTAGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 1914442 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 1914441 GAAGATCTGCATT 1914429 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| |||| || ||||||||| | |||| || ||||||| Sbjct 1915311 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 1915252 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || ||||| ||| | | | | | ||||| || | || || |||| ||||| Sbjct 1915251 TCTTGTATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATA 1915192 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || |||| || || ||||| |||||||| Sbjct 1915191 GTCTTGCCTGTCAGGGTCTTGACAAAGATCTGCAT 1915157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450672854934240