Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq16 111 2e-19 >seq16 Length=32100816 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| |||| || || ||||| || | ||| ||||||||| ||||||||| Sbjct 6271738 TGGGGCAGGAGGTGTTCGGGCTGGTGCCGGGGCTGATGATGTACGCCACGATCTGGCTGC 6271797 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||||||| | || ||||||||||| || | ||||||| || ||| ||||||| | Sbjct 6271798 GCGAGCACAACCGCGTCTGCGACGTGCTCAAGCGCCAGCACCCCGAGTGGGACGACGAGC 6271857 Query 214212 AGCTGTTCCAGATCACTCG 214230 |||| ||||||| ||| || Sbjct 6271858 AGCTCTTCCAGACCACCCG 6271876 Score = 111 bits (122), Expect = 2e-19 Identities = 198/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || ||||| ||| | || || ||| Sbjct 6273509 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATCGATGCCATGGAGCTGTAC 6273568 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | ||| Sbjct 6273569 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAG 6273628 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 ||||| ||||||||||||| ||| || || |||| |||||||||||| | ||| Sbjct 6273629 ATCGGGGCGCCGTTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 6273688 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| || | | | ||| ||||||| | | || |||| Sbjct 6273689 TGGAAGCCCAGCACCTTCGGGGGCAAGGTGGGCTTCGACATCGTCAACACGGCCTCCCTG 6273748 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||| ||||| ||||| || | || |||| Sbjct 6273749 CAGAAGCTCATCTGCAACAACGTGAAGGGCTGTCCCTTCACTGCCTTCC 6273797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723147053166720