Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 132 7e-26 seq8 125 1e-23 >seq6 Length=157563209 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || | ||||||||| || || | ||| | Sbjct 136713329 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 136713388 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || |||||||| |||||||||||||| ||||| | Sbjct 136713389 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAAATGCCTTCTACTGCAGCAAAGG 136713448 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 136713449 CAACCACTCTCTCACC 136713464 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 136715459 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTA 136715518 Query 39854 AA 39855 || Sbjct 136715519 AA 136715520 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 39988 AAATCTTTC-CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 || |||||| | ||| |||||||| || ||||||||||| || ||||||||||||| | Sbjct 136718487 AAGTCTTTCTCACCAGGTTTTCATTGACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 136718546 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 | || ||||| ||||||||||| | | |||| || ||||| Sbjct 136718547 CGTGAGAGATAAAGTATTTTTCATCTGCTTTCAACTTGTTCCA 136718589 >seq8 Length=115844353 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| |||||||| |||||||||||||||| || | || | Sbjct 101499463 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 101499404 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| || |||||||| | Sbjct 101499403 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 101499344 Query 39759 CAAC 39762 | || Sbjct 101499343 CTAC 101499340 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || ||||| || |||||| Sbjct 101500685 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 101500626 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418 |||| || || ||||||||||| ||||| ||||| ||| || ||| Sbjct 101500625 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAT 101500578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686724811477920