Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 seq8 109 4e-19 >seq6 Length=157563209 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| ||||| || || ||| | || ||||| || ||| ||||||||| |||| Sbjct 107514604 GATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGTC 107514545 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 || ||| | ||||| || || || |||||||||||||| || || ||||| || || || Sbjct 107514544 TTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAG 107514485 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | |||||||| || |||||||| || || || Sbjct 107514484 CTATTCACTGCTCACATACATGATTGCCCATGTCAC 107514449 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 || || || | |||| || |||||||| ||||| |||||||| |||||||||||||||| Sbjct 136706691 CTTTAATGCAGAAAATCCATTTGATTTCATGGAGAATATTTCTCTGGAAGGCAAAACAAA 136706632 Query 44542 CTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGA 44598 || ||||| || || ||| ||||||||| || | | || ||| ||||| || Sbjct 136706631 TTTCTTTGAGAAGCGGGTTTCAGAATATCAACGTTTTGCTGTTATGGCAGAAACAATGGA 136706572 Query 44599 CAATAAATTTACTACGGATGAAGATTT 44625 |||| || ||| ||||| |||||| Sbjct 136706571 CAATGTCTTCACTCTGGATGCAGATTT 136706545 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | || ||||||||||||||||| || || ||||| || ||||||||| Sbjct 136713452 GTTGCCTTTGCTGCAGTAGAAGGCATTTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 136713393 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| | || |||||||||| ||||| || || ||||| | || || | ||| Sbjct 136713392 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 136713333 Query 44255 GA 44256 || Sbjct 136713332 GA 136713331 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| || || ||| Sbjct 136717493 CCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCAGAGATG 136717434 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 136717433 TACAGCTTGCTCATAGACACCTACATCAAAGAT 136717401 >seq8 Length=115844353 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || ||||||||||| |||||| Sbjct 101497628 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAAATTGCCATGGAAAAT 101497687 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || |||||||||||||| || || || ||||| || ||| Sbjct 101497688 ATACATTCAGAGATGTACAGTCTTCTTATTGACACCTACATTAAGGAT 101497735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397352202875140