Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq40 87.8 2e-12 seq6 86.0 7e-12 seq1 86.0 7e-12 >seq40 Length=5572044 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || || || ||||| || |||||||| Sbjct 3674891 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCTCCGTGCAGCCTTGTGCCAAACTGA 3674832 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 || ||| | ||| | ||||||||||||| |||||| || ||||||||||| || Sbjct 3674831 CCGATGGGTTGGAGTAAGTTGAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTT 3674776 >seq6 Length=157563209 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| ||| | || || || || Sbjct 40293345 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTGCCAAACTGA 40293404 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || |||| ||||| || |||||||| ||||||||||||||| Sbjct 40293405 CCAATAGGTTGTAGCAGATTCACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 40293464 Query 117425 ATCGT 117429 || || Sbjct 40293465 ATAGT 40293469 >seq1 Length=120002344 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| || |||||||| ||| ||||| ||||||||||| || || ||| Sbjct 623009 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 623068 Query 53390 GAGTGTGCCCACATCTCCAAGT 53411 ||||||||| ||||||||||| Sbjct 623069 CAGTGTGCCCTCATCTCCAAGT 623090 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||||||| | | || |||||||| || || || || |||||| |||||||||||||| | Sbjct 636503 CCTGCTCATTTCCCCCATGCCAACAGCCTCCACTGCCCAGATCCTGGGCAACAACGAGTC 636562 Query 55552 GTTCGAGCCGTACACGACCAACATCTAC 55579 ||||||| ||||| | |||||||||| Sbjct 636563 CATCGAGCCCTACACCAGCAACATCTAC 636590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547069428194400