Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq23 187 3e-42 seq27 150 2e-31 seq1 118 1e-21 >seq23 Length=14943019 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | | Sbjct 1914429 AATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCTAG 1914488 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct 1914489 TGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGAATCCCTCCTGACCA 1914548 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1914549 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1914608 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| |||| || | ||||| Sbjct 1914609 CATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 1914656 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || |||||||| ||| | || Sbjct 1915377 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1915436 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || ||||||||||| ||||| ||||| |||||| Sbjct 1915437 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 1915496 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1915497 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1915556 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| |||| || | ||||| Sbjct 1915557 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 1915603 Score = 150 bits (166), Expect = 2e-31 Identities = 169/227 (74%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || ||||||||||| ||||| || || ||| | || Sbjct 1915157 ATGCAGATCTTTGTCAAGACCCTGACAGGCAAGACTATCACTCTGGAAGTCGAGCCCAGT 1915216 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || ||||||||||| ||||| ||||||||| Sbjct 1915217 GACACCATTGAGAATGTCAAGGCCAAGATACAAGACAAGGAGGGCATTCCCCCAGACCAG 1915276 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || | ||||| || Sbjct 1915277 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG--------GTATCTGACTACAAC 1915328 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || || | || |||| || | ||||| Sbjct 1915329 ATCCAGAAAGAATCCACCCTGCACTTGGTGCTGCGCCTCAGGGGTGG 1915375 >seq27 Length=11933672 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || |||||||| || || || || || ||| | || Sbjct 8214818 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8214877 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| ||||| ||||| |||||| Sbjct 8214878 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 8214937 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 8214938 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 8214997 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || || |||| || Sbjct 8214998 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCT 8215035 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || |||||||| || || || || || ||| | || Sbjct 8216683 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8216742 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| ||||| ||||| |||||| Sbjct 8216743 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 8216802 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 8216803 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 8216862 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || || |||| || Sbjct 8216863 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCT 8216900 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || |||||||| || || || || || ||| | || Sbjct 8216455 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 8216514 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 8216515 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 8216574 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 8216575 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 8216634 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || | ||||| Sbjct 8216635 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 8216681 Score = 140 bits (154), Expect = 4e-28 Identities = 125/157 (80%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || |||||||| ||| | || Sbjct 8212793 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 8212852 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 8212853 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 8212912 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| | || || |||||||| ||||| || || |||| Sbjct 8212913 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 8212949 Score = 140 bits (154), Expect = 4e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27417 TGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGC 27476 || |||||| || || |||||||| || ||||| ||||| || | |||| | ||| | Sbjct 8215872 TGGCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGTGACACCATCGA 8215931 Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 || ||||||| || || ||||||||||| || ||||| ||||| |||||| | || || Sbjct 8215932 GAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGAT 8215991 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||||||| ||||| || || |||| || ||||| | ||||| || |||| ||||| Sbjct 8215992 CTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGA 8216051 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCT 27623 ||||| || || || || |||| || Sbjct 8216052 GTCCACCCTGCACCTGGTGCTGCGCCT 8216078 Score = 131 bits (144), Expect = 2e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||||| || || ||||||||||| |||||||| || ||||||||| | || ||| Sbjct 8216299 AATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAGCAGAGGCTGATT 8216358 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||| ||||| || || |||| ||||||||| ||||||| || |||| ||||| Sbjct 8216359 TTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCAGACTACAACATCCAGAAGGAG 8216418 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || || |||| || | ||||| Sbjct 8216419 TCAACTCTGCACCTGGTGCTGCGCCTCAGGGGTGG 8216453 >seq1 Length=120002344 Score = 118 bits (130), Expect = 1e-21 Identities = 159/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACT 80629 |||| || ||| || | || ||||| ||||||| | | ||||||||||||| | || Sbjct 633622 CCGGGGAGCCCTCGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 633563 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTG 80689 ||| ||||| ||| || ||| |||||||| | || ||| | | ||||| | Sbjct 633562 CCA---GGGCCCCGTAGTAGATGGTCTCAAAGATGTGCTGGTTGAGGAGCTGAGCCTGGG 633506 Query 80690 GGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGG 80749 || || || | || | ||| | ||||| |||||||||||||||| ||||||||| Sbjct 633505 GGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGC 633446 Query 80750 CGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 |||| |||||||| ||| ||| || |||||||||| ||| Sbjct 633445 CGATGGGGCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGG 633406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570157642359360