Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq18 297 3e-75 >seq18 Length=21346708 Score = 297 bits (328), Expect = 3e-75 Identities = 679/1007 (67%), Gaps = 30/1007 (3%) Strand=Plus/Plus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || |||||| ||||||||||| |||||| |||||| | | | || | | Sbjct 18004096 CGCCCGGCGACTACCTGAACATGACGAGGGACTGCAGAGCCTTCAAGGAGACCCGGCGCT 18004155 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 | ||| | || ||||||| ||| |||| ||||| |||||||||||||| || || | Sbjct 18004156 ACATCGAGTTCCCGCTGAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTCA 18004215 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 |||||||||| ||||| ||||| ||||| |||||| | || | |||||||| ||||| Sbjct 18004216 TCCACCACAAAATCGACATGTTTGAGCGGCTCCTGCGCTCCGTGTACGCCCCCCAGAATG 18004275 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGGC 13837 ||||||||||||| |||||| ||| || | || ||| | || ||| || ||| Sbjct 18004276 TCTACTGCGTCCATGTGGACAGCAAAGCCCCGGCCGCCTTC--CAGGAGGCTGTGCGGGC 18004333 Query 13838 CATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGG 13897 |||||| |||||||| ||||| | ||||| ||| ||| | |||||| |||| Sbjct 18004334 CATCGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTACGC 18004393 Query 13898 CTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGT 13957 | ||||| || ||||||||||||||| ||||||| ||||||| ||| || Sbjct 18004394 CGCCTGGCCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCGGT 18004453 Query 13958 CAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGA 14017 |||| | ||||| ||||| ||||| | |||||||| ||||||||||| || Sbjct 18004454 GCCGTGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGA 18004513 Query 14018 GATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATG 14075 ||| || ||||||||| || ||| ||| | ||| | ||||| || |||| | | Sbjct 18004514 GATGGTCCGGGCGCTGCAGCTGCTGCAGGGCCACAACAGCGTGGAGTCAGAGAGGCCCT- 18004572 Query 14076 CCCAACCACAAGCTGCACCGCATCAGGAAGAGGC---ACGTGGTGGCCAGCGGCGGCGTG 14132 | | |||| ||| || | ||||| | ||| ||||| | ||| | Sbjct 18004573 -CGGCCGCCAAGGAGCAGCG---CTGGAAGTTCCACTACGAGGTGGGGAAGGGCATC--- 18004625 Query 14133 GTGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGA 14192 || ||| | | ||| || ||||| || | || |||||| || |||| Sbjct 18004626 --TCTC-GCACTGCCCAGAAGAAATTGCCGCCACCCCACAACTACCCCATGTTCACGGGC 18004682 Query 14193 AACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTG 14252 | ||| ||| |||||||| || || |||||| | | |||| || || || || | | Sbjct 18004683 AGCGCGTACAACGCGGTCACGCGCGACTTCGTGCAGTACGTCTTCGAGAAC---CCCGCG 18004739 Query 14253 GCCC---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCC 14309 || | | || | | |||| | |||||| ||||||||||| |||||| | |||||| Sbjct 18004740 GCACAAAGGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCCGATGAGCACGTCTGGGCC 18004799 Query 14310 ACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATC-CCCGTTCACGTCAAGTACGACAC 14368 ||| || | | ||| |||| |||||||| | ||| || |||| | | Sbjct 18004800 ACCCTGAACCGCATG-CCGGGCGTGCCGGGGGGCGCGCCCCCGAGCGATAAGTTCCAGCT 18004858 Query 14369 CTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAA 14428 |||||||||| || | | | ||||||||||| ||| |||||||| || Sbjct 18004859 CTCGGACATGAACGCGCTTCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGGGACATTCG 18004918 Query 14429 GAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGG 14488 || || || | |||||||| ||| |||| |||| | | |||||||| ||| ||| Sbjct 18004919 CAAGGGCGCGCCCTACCCGCCCTGCACCGGCCGCCACCAGCGCACCATCTGCGTCTACGG 18004978 Query 14489 GTCCGGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACG 14547 | |||||||| ||| || | ||| | | || || || ||||||||||||||| Sbjct 18004979 GGTGGGCGACGTTCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACC 18005037 Query 14548 ACGAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 |||| |||||| ||||||| || || || || || ||||| Sbjct 18005038 CCGAGGTGGACGATGCGGCCGTGCAGTGCCTCGAGGAACACCTGCGC 18005084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658562756705280