Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27]
21,428 sequences; 1,118,343,587 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq23 98.7 9e-16
>seq23
Length=14943019
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| |||||| | || || ||||| || || ||
Sbjct 1914430 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCTAGT 1914489
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| ||||| ||||| || ||||| ||||| || || || || ||
Sbjct 1914490 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGAATCCCTCCTGACCAG 1914549
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| || ||||||| | ||| | || || ||||||
Sbjct 1914550 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1914609
Query 27168 ATTCAAAAGGAGTCGAC 27184
|| || |||||||||||
Sbjct 1914610 ATCCAGAAGGAGTCGAC 1914626
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || ||||| |||||| | || || ||||| || || ||
Sbjct 1915376 CATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 1915435
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | ||||| || || || ||||| ||||| || || || || ||
Sbjct 1915436 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCA 1915495
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | ||| ||||| || ||||||| | ||| | || || |||||
Sbjct 1915496 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1915555
Query 27167 CATTCAAAAGGAGTCGAC 27184
||| || |||||||||||
Sbjct 1915556 CATCCAGAAGGAGTCGAC 1915573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434801907106560
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |