Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 >seq6 Length=157563209 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| | || || ||||| || || ||||| |||| Sbjct 107514451 GACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCTAG 107514510 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | |||||||| ||||| |||| || ||||| || ||||| Sbjct 107514511 TCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAGAA 107514570 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 ||||| |||| ||||| || || | |||||| Sbjct 107514571 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATC 107514604 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||| | || || ||||| |||| ||||| ||||| || ||||| || |||| Sbjct 107514604 GATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGTC 107514545 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||| |||||||| | || ||||||||||| |||| ||||| || || ||||| || Sbjct 107514544 TTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAG 107514485 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || | |||||||| |||||||| || |||||| Sbjct 107514484 CTATTCACTGCTCACATACATGATTGCCCATGTC 107514451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 107518293 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 107518352 Query 6959 CGAGATG-GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | || ||| ||| |||| ||||| || || || ||||| | ||| ||||| ||||| Sbjct 107518353 C-TGCTGCTGAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCATCCCAAATCTT 107518411 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGG 7043 ||| || | |||||||| |||| Sbjct 107518412 CACGCCTTTTGCAGAGAGCTCTTTGG 107518437 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||| | ||||| || || || | Sbjct 107518437 CCAAAGAGCTCTCTGCAAAAGGCGTGAAGATTTGGGATGCTAATGGGTCCCGTGAGTTCC 107518378 Query 34362 TGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 |||| |||| ||| ||| || | | |||||||| || ||||| || || || || ||| Sbjct 107518377 TGGATAAGCAGGGTTTCAGCAGCA-GAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTC 107518319 Query 34421 CAGTGGAGACACTTTGGGGCGGAGTA 34446 |||||||| || ||||| || || || Sbjct 107518318 CAGTGGAGGCATTTTGGAGCAGAATA 107518293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448142332916160