Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 >seq6 Length=157563209 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||| ||||| |||||||| | || || || ||||| ||| Sbjct 71738464 GTGGTGGAGGAGCTCTTCCGAGACGGGGTTAACTGGGGCAGAATCGTGGCCTTCTTCGAG 71738523 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 ||||| || || ||||| ||||| |||||||| || | || | | || || |||| | Sbjct 71738524 TTTGGCGGCGTGATGTGCGTGGAGAGCGTCAACAGGGAGATGTCTCCGCTGGTGGACAGC 71738583 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||||| |||||||| || Sbjct 71738584 ATCGCCGCCTGGATGACCGA 71738603 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || |||||||||||||| | || |||||||| | ||||||||| Sbjct 107514443 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 107514502 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||||||| | || ||||| || | ||||||||| | || || ||| | Sbjct 107514503 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 107514562 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || |||||||||| | |||| Sbjct 107514563 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 107514603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414368557829392