Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq23 145 2e-29 seq27 138 3e-27 >seq23 Length=14943019 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||| ||||| || || || |||| ||||| || | || || | ||||| Sbjct 1915589 CAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1915530 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || ||||| || || || ||||||||||| Sbjct 1915529 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 1915470 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||| |||||||| || || || || | ||||| || Sbjct 1915469 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 1915410 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 1915409 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1915377 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||||||||| ||||| || || || |||| ||||| || | || || | ||||| Sbjct 1914642 CAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1914583 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || || || ||||||||||| Sbjct 1914582 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 1914523 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| || ||| ||| || |||||||| | || || || | ||||| || Sbjct 1914522 CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGGGTGATGGT 1914463 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| || || | ||| | |||||||| Sbjct 1914462 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 1914427 Score = 109 bits (120), Expect = 1e-18 Identities = 138/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||||||||||| |||| ||||| || | | ||||| Sbjct 1915361 CAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGATA--------CCATC 1915310 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || ||||| || |||||||| Sbjct 1915309 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 1915250 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| ||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 1915249 TTGTATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGT 1915190 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 1915189 CTTGCCTGTCA 1915179 >seq27 Length=11933672 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 8216073 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 8216014 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 8216013 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 8215954 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || |||||| || | ||||| || Sbjct 8215953 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTGATGGT 8215894 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 8215893 CTTGCCAGTCA 8215883 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 8215030 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 8214971 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || || || ||||||||||| Sbjct 8214970 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 8214911 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| || || || || | ||||| || Sbjct 8214910 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 8214851 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| ||||| | ||| | ||||| Sbjct 8214850 CTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8214818 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 8216667 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 8216608 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 8216607 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 8216548 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| || || || || | ||||| || Sbjct 8216547 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 8216488 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| ||||| | ||| | ||||| Sbjct 8216487 CTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216455 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 8216895 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 8216836 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || || || ||||||||||| Sbjct 8216835 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 8216776 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| || || || || | ||||| || Sbjct 8216775 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 8216716 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| ||||| | ||| | ||||| Sbjct 8216715 CTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216683 Score = 107 bits (118), Expect = 5e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| ||||| || || || |||| ||||| || | || || | ||||| Sbjct 8216439 CAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCTGACAGGGTACGACCATC 8216380 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| |||||||| || || | || ||||| || ||||| ||||||||||| Sbjct 8216379 TTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTC 8216320 Query 225621 TTGGATCTTTTGCTTCACA 225639 |||||||| ||||||| Sbjct 8216319 CTGGATCTTGGCCTTCACA 8216301 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| ||||| || | || || || || ||||| |||||| Sbjct 8212950 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 8212891 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||||||| ||| |||||||| || || || || | ||| Sbjct 8212890 TTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 8212831 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||| || |||| Sbjct 8212830 ATGGTCTTACCAGTCA 8212815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192203795031032