Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq52 87.8 1e-12 >seq6 Length=157563209 Score = 107 bits (118), Expect = 2e-18 Identities = 126/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 ||||||||||||||||| || ||||| ||||||| || ||||| || ||| |||| ||| Sbjct 107518305 AAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCTCTGCTGCT-GAA 107518363 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | ||| || || || ||||| ||||| || || || | Sbjct 107518364 ACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCATCCCAAATCTTCACGCCTTTTGC 107518423 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 30180 ||||||||||||| ||||| || || || || || ||||| || Sbjct 107518424 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAGAAG 107518466 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 30165 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30224 ||| |||||||||||||||||||| || ||||||| || |||||||| |||||||| | Sbjct 107519730 TGATGAACCACAGCAGCTCCTCCAGCACTCCCTTCCAGAACACCCTCTTCGTCGTGAGCA 107519789 Query 30225 GGGGAAACTG 30234 | |||||||| Sbjct 107519790 GCGGAAACTG 107519799 >seq52 Length=59856998 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| || | || | |||||| | | ||| | ||||| || || Sbjct 59217712 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 59217653 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| ||||||| |||||| Sbjct 59217652 ATGGAGAACCACGTTTTTTTACCCATTATCAGTGCGTTCTGTTTACCT 59217605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406057128957208