Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6 120 2e-22 >seq6 Length=157563209 Score = 120 bits (132), Expect = 2e-22 Identities = 142/187 (76%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 107518283 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 107518342 Query 27549 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || ||| |||| ||| ||| ||| |||| || || | ||| || || || | Sbjct 107518343 ACCCTCCTCTCTGCTGCT-GAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCAT 107518401 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||| ||||| || || || | ||||||||||||| ||||| || || || || || | Sbjct 107518402 CCCAAATCTTCACGCCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 107518459 Query 27668 ACAGCAG 27674 |||| || Sbjct 107518460 ACAGAAG 107518466 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 27659 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 27718 ||| |||||||||||||||||||| || ||||||| || |||||||| |||||||| | Sbjct 107519730 TGATGAACCACAGCAGCTCCTCCAGCACTCCCTTCCAGAACACCCTCTTCGTCGTGAGCA 107519789 Query 27719 GGGGAAACTG 27728 | |||||||| Sbjct 107519790 GCGGAAACTG 107519799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369410701809068