Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 3e-11 >seq6 Length=157563209 Score = 82.4 bits (90), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| ||| |||| |||||| | || | ||| |||||||| || || ||| | | || Sbjct 107514603 ATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTT-CTAAATGGTGAATTGTC 107514545 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | |||||| |||||| |||||| | || || || ||||| |||||||| Sbjct 107514544 TTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAG 107514485 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||||| |||| || | ||||||| Sbjct 107514484 CTATTCACTGCTCACATACATGATTGC 107514458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190047628647080