Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq23 154 3e-32 seq27 118 2e-21 >seq23 Length=14943019 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||||| || ||||| ||||| || ||||||||||| || | | || Sbjct 1914651 CCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1914592 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | |||||| Sbjct 1914591 ACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCC 1914532 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || ||||| |||||| |||| | | |||| | ||| || ||||| Sbjct 1914531 TTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAG 1914472 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||||| || ||||| ||||||| ||||||||| Sbjct 1914471 GGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 1914427 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||||| || ||||| ||||| || ||||||||||| || | | || Sbjct 1915598 CCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 1915539 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| |||||||||||||| | | |||||| Sbjct 1915538 ACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCC 1915479 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || |||||| | || | | |||| ||| ||| || || Sbjct 1915478 TTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCGACCTC 1915422 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || |||||||| || ||||| ||||||| |||||| Sbjct 1915421 AAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1915377 Score = 107 bits (118), Expect = 4e-18 Identities = 159/225 (71%), Gaps = 14/225 (6%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || | || || || || ||||| ||||||||||| || | || Sbjct 1915370 CCTGAGGCGCAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGATA---- 1915315 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 |||||||| || || || || ||||| |||||||||||||| | | || || Sbjct 1915314 ----CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 1915259 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| ||||| || || |||||| |||| | | |||| ||| ||| ||||| Sbjct 1915258 CTCCTTGTCTTGTATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACTTC 1915202 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| || || ||||| || |||| |||||| Sbjct 1915201 CAGAGTGATAGTCTTGCCTGTCAGGGTCTTGACAAAGATCTGCAT 1915157 >seq27 Length=11933672 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || ||||| || ||||||||||| |||| | || Sbjct 8215039 CCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 8214980 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | |||||| Sbjct 8214979 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCC 8214920 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || || |||| | | |||| ||| ||| ||||| Sbjct 8214919 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACTTC 8214863 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || || |||||||||| |||||| Sbjct 8214862 CAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8214818 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || ||||| || ||||||||||| |||| | || Sbjct 8216904 CCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 8216845 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | |||||| Sbjct 8216844 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCC 8216785 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || || |||| | | |||| ||| ||| ||||| Sbjct 8216784 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACTTC 8216728 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || || |||||||||| |||||| Sbjct 8216727 CAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216683 Score = 105 bits (116), Expect = 2e-17 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || ||||| || ||||||||||| |||| | || Sbjct 8216676 CCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 8216617 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| ||||||||||| || | | || || Sbjct 8216616 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCC 8216557 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || || |||| | | |||| ||| ||| ||||| Sbjct 8216556 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACTTC 8216500 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || || |||||||||| |||||| Sbjct 8216499 CAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153504022826188