Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq23 143 6e-29 seq27 136 8e-27 seq1 93.3 9e-14 seq3 89.7 1e-12 seq16112 84.2 5e-11 >seq23 Length=14943019 Score = 143 bits (158), Expect = 6e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | ||||| || || || || | || || || |||||||||||||||| Sbjct 1914657 ACCACCCCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGA 1914598 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || || || |||||||||| | || |||||| || Sbjct 1914597 CAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 1914538 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| ||||| || || || || | || || ||||| || ||||| Sbjct 1914537 GATTCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGAC 1914478 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| ||||| ||||||| ||||| ||||| |||||||||||| Sbjct 1914477 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTTC 1914426 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | ||||| || || || || | || || || |||||||||||||||| Sbjct 1915604 ACCACCCCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGA 1915545 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || || || || ||||||| | || |||||| || Sbjct 1915544 CAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGG 1915485 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| || || || | || || ||||| | ||||| Sbjct 1915484 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 1915425 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 1915424 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1915377 Score = 129 bits (142), Expect = 1e-24 Identities = 164/227 (72%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || |||| || | ||| |||||| |||||||||||||||| Sbjct 1915375 CCACCCCTGAGGCGCAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAT 1915316 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| || || || || || |||||||||| | || ||||| ||| Sbjct 1915315 A--------CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 1915264 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| ||||| || || || | || || ||||| | |||||| Sbjct 1915263 ATGCCCTCCTTGTCTTGTATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACT 1915204 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| || || |||||||| Sbjct 1915203 TCCAGAGTGATAGTCTTGCCTGTCAGGGTCTTGACAAAGATCTGCAT 1915157 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1911140 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1911198 >seq27 Length=11933672 Score = 136 bits (150), Expect = 8e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || ||||| || | ||| || || |||||||||||||| | || ||||| Sbjct 8215035 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 8214976 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || |||||||||| | || |||||| || || || ||| Sbjct 8214975 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCC 8214916 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || ||| | || || ||||| | |||||||| || ||| Sbjct 8214915 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTG 8214856 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||| || || ||||| |||||||| Sbjct 8214855 ATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8214818 Score = 136 bits (150), Expect = 8e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || ||||| || | ||| || || |||||||||||||| | || ||||| Sbjct 8216900 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 8216841 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || |||||||||| | || |||||| || || || ||| Sbjct 8216840 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCC 8216781 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || ||| | || || ||||| | |||||||| || ||| Sbjct 8216780 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTG 8216721 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||| || || ||||| |||||||| Sbjct 8216720 ATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216683 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 8216681 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 8216622 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||||| | || || || ||| Sbjct 8216621 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 8216562 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | || || ||||| | |||||| Sbjct 8216561 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACT 8216502 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| || || ||||| |||||||| Sbjct 8216501 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216455 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || ||||| || | ||| || || |||||||||||||| | || ||||| Sbjct 8216078 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 8216019 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || || || || |||||||||| | || || || ||||| || ||| Sbjct 8216018 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 8215959 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| || || ||| | ||||| ||||| | ||| || || |||||| Sbjct 8215958 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTG 8215899 Query 283062 ATCGTCTTACCCGTCAAAGTCTT 283084 || ||||| || |||| ||||| Sbjct 8215898 ATGGTCTTGCCAGTCAGGGTCTT 8215876 >seq1 Length=120002344 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 99407697 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 99407639 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 99411687 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 99411745 >seq3 Length=74947036 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 45992648 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 45992706 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 46897996 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 46897938 >seq16112 Length=300 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| ||||||||||||||||| || |||||||||||||| || || ||||| || |||| Sbjct 1 CTTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGA 60 Query 282970 TCAAACGTTGTTGGTC 282985 ||| || || ||||| Sbjct 61 TCAGGCGCTGCTGGTC 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046451821677912