Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq16 203 5e-47 seq24 107 3e-18 >seq16 Length=32100816 Score = 203 bits (224), Expect = 5e-47 Identities = 223/297 (75%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 6273797 GGAAGGCAGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 6273738 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| ||||| | || |||||||||||||||||||||||| | |||| Sbjct 6273737 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 6273678 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || ||||||||||| ||||| | ||| | ||| Sbjct 6273677 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCCCCGATCTCCACCATGG 6273618 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 6273617 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 6273558 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| ||||| || || || || || || ||||| |||||||||| Sbjct 6273557 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 6273501 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || |||||||| ||| || || || | | || || Sbjct 6271882 ATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGCGCTTGAGC 6271823 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || ||||| || | |||||| || | |||||||| |||||||||||||| ||||| || Sbjct 6271822 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 6271763 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| || || |||| || || || | | ||| || || ||||| | ||| || Sbjct 6271762 ACCAGCCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCAGGCACGTGGGGCGGG 6271703 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | | |||| ||| |||| || || ||||| || ||||| |||||| Sbjct 6271702 TACAGCATCTCCGCCTGCGTGTCCCGCACCGTCGGCGGGTACATCTCGCCGTCGATCATC 6271643 Query 9484 TG 9485 || Sbjct 6271642 TG 6271641 >seq24 Length=12378331 Score = 107 bits (118), Expect = 3e-18 Identities = 181/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| | |||| ||| ||| |||||| || || || || | | ||| Sbjct 10569720 GGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACAAGCTTCTCGAGGGATGCTG 10569661 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| | || || ||||| || || || ||||||||||||||| | |||| Sbjct 10569660 TCTTAACGATCTCAAAGCCAGTTTCTCCACCAAATGTACTGGGCTTCCAGTACTCTGGGG 10569601 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| || | | || || || ||||| || ||||| || | ||| | |||| Sbjct 10569600 AGCAGATGGGATTGCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGC 10569541 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || ||| | ||||| |||| || || | || || || | ||| | ||||| Sbjct 10569540 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCA 10569481 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| || | |||||| || || Sbjct 10569480 GAGCATCAATGTCTCCATACAG 10569459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716684784549120