Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq27 152 1e-31 seq23 143 6e-29 seq16112 100 7e-16 >seq27 Length=11933672 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| || || || || || |||||||| || || | ||| || | Sbjct 8214821 CAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCG--AGCCCAGTG 8214878 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||| |||||||||||||| ||||||| Sbjct 8214879 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGC 8214938 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||||||| | || || |||| || ||| Sbjct 8214939 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACA 8214998 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||| || || || | ||||| Sbjct 8214999 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAG 8215038 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| || || || || || |||||||| || || | ||| || | Sbjct 8216686 CAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCG--AGCCCAGTG 8216743 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||| |||||||||||||| ||||||| Sbjct 8216744 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGC 8216803 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||||||| | || || |||| || ||| Sbjct 8216804 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACA 8216863 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||| || || || | ||||| Sbjct 8216864 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAG 8216903 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| || || || || || |||||||| || || | ||| || | Sbjct 8216458 CAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCG--AGCCCAGTG 8216515 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 8216516 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGC 8216575 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||||||| | || || |||| || ||| Sbjct 8216576 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACA 8216635 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||| || || || | ||||| Sbjct 8216636 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAG 8216675 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC 177995 || || || || || || || ||||| || ||||||||| | ||||||||||||||| Sbjct 8215876 AAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAACCCAGTGACACCATCGAGAAC 8215935 Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 || || ||||| |||||||| ||||| || || || || ||||| | || ||||| Sbjct 8215936 GTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTT 8215995 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCA 178115 || || || ||||| ||||||||| | || || |||| || ||| |||| || || || Sbjct 8215996 GCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCC 8216055 Query 178116 ACACTGCATCTTGTTTTGAGACTCAG 178141 || ||||| || || || | ||||| Sbjct 8216056 ACCCTGCACCTGGTGCTGCGCCTCAG 8216081 >seq23 Length=14943019 Score = 143 bits (158), Expect = 6e-29 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || |||||||| ||||| || || ||| Sbjct 1915380 CAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGTG 1915437 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || ||||| ||||| |||||||| |||||||||||||| ||||||| Sbjct 1915438 ACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGC 1915497 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 1915498 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAACA 1915557 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||| ||||| || | ||||| Sbjct 1915558 TCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAG 1915597 Score = 136 bits (150), Expect = 1e-26 Identities = 169/229 (74%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || || || || || || || |||||||| ||||| || Sbjct 1914427 AAAATGC---AGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGA- 1914482 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || || ||||||| ||||| ||||| || || |||||||| ||||||||||||| Sbjct 1914483 -GCCTAGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGAATCCCTC 1914541 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || ||||| || || || ||||| |||||||| | || || | | Sbjct 1914542 CTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTG 1914601 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || ||| |||| || || || || ||||| ||||| || | ||||| Sbjct 1914602 ACTACAACATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAG 1914650 >seq16112 Length=300 Score = 100 bits (110), Expect = 7e-16 Identities = 85/103 (83%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| || || || ||||| ||||||||||||||||| || || | Sbjct 265 CAGATCTTCGTGAAAACCCTGACGGGCAAAACCATCACCCTCGAGGTGGA--GCCCAATG 208 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||| ||| ||||| |||||||| ||||| Sbjct 207 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203400720113032