Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq27 132 4e-26 seq23 113 4e-20 >seq27 Length=11933672 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| ||||| |||||||| |||||||| Sbjct 8216672 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 8216613 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 8216612 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 8216553 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | ||| || |||| || Sbjct 8216552 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTG 8216493 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || || ||||| |||||||| Sbjct 8216492 ATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216455 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | || || | |||||| ||||| ||| ||||||||| ||||| |||||||| Sbjct 8215045 GCCGCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 8214986 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 8214985 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 8214926 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||||| | | ||||| || | ||| || Sbjct 8214925 GATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGAC 8214866 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| || || ||||| |||||||| Sbjct 8214865 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8214818 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | || || | |||||| ||||| ||| ||||||||| ||||| |||||||| Sbjct 8216910 GCCGCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 8216851 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 8216850 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 8216791 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||||| | | ||||| || | ||| || Sbjct 8216790 GATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGAC 8216731 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| || || ||||| |||||||| Sbjct 8216730 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 8216683 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| ||||| |||||||| |||||||| Sbjct 8216078 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 8216019 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 8216018 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 8215959 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | |||||||||| || Sbjct 8215958 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGAGTG 8215899 Query 41825 ATCGTTTTACCCGTCAGCGTCTT 41847 || || || || ||||| ||||| Sbjct 8215898 ATGGTCTTGCCAGTCAGGGTCTT 8215876 Score = 98.7 bits (108), Expect = 9e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| || ||||||||| ||||| ||||| || ||||| || Sbjct 8216444 AGGCGCAGCACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCTGACAGGGTACGA 8216385 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| | ||| ||||| | ||||| | ||| Sbjct 8216384 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGGGGAATTCCTTCC 8216325 Query 41765 TTGTCCATGATTTTTTGCTTCA 41786 |||||| ||| || ||||| Sbjct 8216324 TTGTCCTGGATCTTGGCCTTCA 8216303 Score = 89.7 bits (98), Expect = 5e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| ||||| |||||||| |||||||| Sbjct 8214807 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 8214748 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 | || || ||||||||||| || || ||||| | ||| ||| Sbjct 8214747 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG 8214706 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || || ||||||||||| || || ||||| | ||| || || | ||||| || |||||| Sbjct 8212947 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 8212888 Query 41768 TCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATC 41827 ||| ||| || ||||| | ||||| || | ||| ||||| | || || Sbjct 8212887 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 8212828 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| ||||| || || ||||||||||| Sbjct 8212827 GTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATGTT 8212790 >seq23 Length=14943019 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || ||||||||| ||||| ||||| || ||||| || | || || Sbjct 1914638 ACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 1914579 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | || | | ||||||||| | Sbjct 1914578 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGG 1914519 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||| | | | ||||| || | ||| ||||| | || || || || Sbjct 1914518 ATTTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCAAGGGTGATGGTCTTG 1914459 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 |||||||| ||||| ||||| |||||||| || || Sbjct 1914458 CCCGTCAGGGTCTTGACGAAGATCTGCATTTTCTC 1914424 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || ||||||||| ||||| ||||| || ||||| || | || || Sbjct 1915585 ACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 1915526 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| ||||| | ||| ||||| | || | | ||||||||| | Sbjct 1915525 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGG 1915466 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | ||||| || | ||| ||||| | || || || || Sbjct 1915465 ATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 1915406 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| ||||| ||||| ||||||||| Sbjct 1915405 CCCGTCAGGGTCTTGACGAAGATCTGCATG 1915376 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/219 (68%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||||| ||||| ||| || ||||| ||||| ||||| || | Sbjct 1915366 AGGCGCAGCACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGATAC------- 1915314 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||||| || |||| Sbjct 1915313 -CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 1915255 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| || || ||| | | | ||||| || | ||| || |||| || Sbjct 1915254 TTGTCTTGTATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTG 1915195 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 1915194 ATAGTCTTGCCTGTCAGGGTCTTGACAAAGATCTGCATG 1915156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462180171873600