Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq26143 233 1e-56 seq11380 89.7 4e-13 >seq26143 Length=900 Score = 233 bits (258), Expect = 1e-56 Identities = 544/809 (67%), Gaps = 21/809 (3%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || |||||| || ||||| ||| || | |||||| || | Sbjct 851 ATCAACTGCTCGGGGATCGTCCGCGGGGATGAGGCGGCCATCCAGGAGGCCCAGCTCAGC 792 Query 107583 AACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCAC---TGGCACCTATTACCTCAACATA 107639 |||||||| || ||| || || | | || || |||| | ||||| || || Sbjct 791 AACCTGGAGGTTGCGAACAAAAGGGCTTCCCTGACGCCTGGCG---AGTACCTGAATATG 735 Query 107640 ACCAGAGACTGTGAGC-GCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAA 107698 || | ||||| ||| ||||||||| || | |||| || | || ||| | | Sbjct 734 ACGAAGGACTGC-AGCAGCTTCAAGGAGACTCGGCGGGTCATTGAGGTTCCCCTGGGGCA 676 Query 107699 AGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTT 107758 || || || ||| |||||||| |||||||| ||||| ||||||| || || || | || Sbjct 675 AGGAG-GC-AGAGTTCCCCATCGCCTACTCCATGGTCATCCATGACAAAATCGAGATGTT 618 Query 107759 TGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGT 107818 ||| ||||| ||||| || | || ||||| |||||| | ||||| |||||| | || Sbjct 617 TGAGCGGCTCCTGCGCTCCCTCTACGCCCCCCAGAACGTCTACTGCGTCCACATTGACAG 558 Query 107819 GAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGT 107878 ||||||| | | ||| | ||||| || ||||||| | |||||||||||||||| Sbjct 557 CAAGTCCCAGGCCGCCTTCCAGGAGGCTGTTCGGGCCATTGTAGCCTGCTTCCCCAATGT 498 Query 107879 CTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGA 107938 ||| |||| | || || ||| ||||| || | |||| || || Sbjct 497 CTTTGTGGCTAACCGCCCGGGAAAGGGGGTCGATGCC-------CCCGGCTGCAGGCCGA 445 Query 107939 CCTGAACTGTATGGAAGACTTGCTCCAGAG-CTCAGTGCCATGGAAGTACTTACTGAATA 107997 ||| ||||| ||| | ||| || | ||||| |||| |||||||| ||| | || || | Sbjct 444 CCTCAACTGCATGCAGGACCTGTTGCAGAGCCTCA-TGCCATGGCGCTACGTCCTCAACA 386 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | ||||| || || |||||||| |||||||| |||||||| |||| ||||| ||| || Sbjct 385 CCTGCGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCGTCCGTGCCCTGAAGTTGC 326 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 || |||| |||||| |||||||| ||| || || | ||| | | |||||| Sbjct 325 TGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCCTCAAGCAGGAGCGCTGGC 266 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TGAAGGACCCTCCC 108176 | |||| | | || || | ||| | ||| |||| | | ||| || || Sbjct 265 AGTACCACCACGAAGT-AGGGACGTTCATCTCCCGGACAGCCACAGAGAAACTGCCGCCA 207 Query 108177 CCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTC 108236 || | || | ||||||||||| || || || || |||||| | | || ||||| || Sbjct 206 CCACACAACTCTCCCATGTTCACGGGCAACGCATACATTGTGGTCACACGGGCCTTCGTG 147 Query 108237 CAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTAT 108296 || || |||| | ||||| | | || | | || |||| ||| |||||||| Sbjct 146 CAGCACATCTTCAAGAACCCCACGGCGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTAC 87 Query 108297 AGCCCCGACGAACACCTCTGGGCCACCCT 108325 ||||| || || ||| ||||||||||||| Sbjct 86 AGCCCTGATGAGCACGTCTGGGCCACCCT 58 >seq11380 Length=17708 Score = 89.7 bits (98), Expect = 4e-13 Identities = 228/344 (66%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 9531 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCATAAA 9590 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | ||||||||||| ||| | ||||| | Sbjct 9591 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAAAACTTTTACTGCATT 9650 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || |||||| ||||| |||| | || || |||| || | || || Sbjct 9651 CATGTTGACAAGAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGGATAGTCTCATGT 9710 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 9711 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAAAGTGTTGTATATGCTTCATGGAGCAGG 9770 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAG-CTCAGTGCCA--TGGAAG 107984 ||||| || ||| | ||||| ||| |||| ||||| || ||| | | ||||| Sbjct 9771 GTGCAGGCAGACATTAACTGCATGAAAGA---TCTCCACAGAAGAAGTTCAAACTGGAAA 9827 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 ||| || | || || || | ||||| || ||||||||||| Sbjct 9828 TACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 9871 Score = 84.2 bits (92), Expect = 2e-11 Identities = 196/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 10120 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 10179 Query 108334 CTCCGTGGATGCCTGGCT-CTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | || || | | ||| || || || ||||| | | || |||||| Sbjct 10180 -TCCCTGAAGTCCCGGGTGCAGTTTCTTCTAGTGAC---AAGTACGATGTTTCTGACATG 10235 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGA--GGGAGATGTCAGCATGGGGG 108447 | ||| | |||||| | ||||||||||||||| || | || ||||| || || | Sbjct 10236 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATGTC--CAAAGGTG 10293 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | || || |||| ||| |||| | || | | |||| ||| |||| || | Sbjct 10294 CACCCTACCCACCATGCAGTGGAGTTCACGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAG 10353 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| | ||||| || | ||||| ||| |||| || || ||||||||| Sbjct 10354 ACCTGAAGTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 10403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348025210897386