Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq33965 107 1e-18 >seq33965 Length=3108 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||||| || || | |||||||| ||| Sbjct 417 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGTTGC 358 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || ||||| ||| | ||||||||| || || | Sbjct 357 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 298 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 297 GCCTTAACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCTGTC 238 Query 18303 AATGTTTTTACAAAAATTTGCAttttt 18329 | || || ||||| || ||||||||| Sbjct 237 AGGGTCTTCACAAAGATCTGCATTTTT 211 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || |||| || | || |||| ||| || || ||||| || || |||||||||| Sbjct 901 GTTA-CCACCCCTCAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGT 843 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 ||| || || | |||||||| ||| ||||| ||| |||| || || || ||||| Sbjct 842 CGGACAGGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGG 783 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 ||| | ||||||||| || || | |||||| | ||| ||||||| ||||| Sbjct 782 GGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCT 723 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325 | || | ||||||| | ||||| |||| || || || || || ||||| Sbjct 722 CAACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 671 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||||| || || | |||| Sbjct 654 AGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 595 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || ||||| ||| | ||||||||| || Sbjct 594 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 535 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| || | ||||||| | Sbjct 534 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 475 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325 ||||| |||| || || || || || ||||| Sbjct 474 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379078676018805