Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq33965 113 4e-20 seq35780 107 2e-18 >seq33965 Length=3108 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||||||||| || |||||| | || ||||| || Sbjct 670 CATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 729 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || ||||| || Sbjct 730 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 789 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| || ||||||| || || ||| || || Sbjct 790 GCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGCACCCTGTCCGACTACAA 849 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || ||||| ||||| || |||| || | |||||||| |||| Sbjct 850 CATCCAGAAGGAATCCACTCTGCACTTGGTGCTGCGCCTGAGGGGTGGTA 899 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||||||||| || |||||| | || ||||| || Sbjct 211 AAAAATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGAGCC 270 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | |||| || || | || ||||||||||||| | || ||||| Sbjct 271 CAGTGACACCATTGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 330 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || || |||||||| || ||||||| || || ||| || Sbjct 331 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGCACCCTGTCCGACTA 390 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || ||||| || || | |||||||| || Sbjct 391 CAACATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 441 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||||||||| || |||||| | || ||||| || Sbjct 442 CATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 501 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || ||||| || Sbjct 502 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 561 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || || ||| || || Sbjct 562 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 621 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| ||||| || |||| || Sbjct 622 CATCCAGAAGGAATCCACTCTGCACTTGGTGCT 654 >seq35780 Length=25771 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| ||||| |||||||| | || || || Sbjct 15452 ACCTCATCTTTGCTAGTATACTCCACTATTTCTGTACACAGATTGCTGCTTTTGATGGTC 15511 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||| ||||| || || ||||| || || ||||| ||||||||||| ||| Sbjct 15512 CCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTG 15571 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| || || ||||| || Sbjct 15572 CCGGTCTCTGTCTGAGATTCAATGATAGC 15600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445446623900880