Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq29343 131 2e-25 seq10457 98.7 9e-16 >seq29343 Length=28090 Score = 131 bits (144), Expect = 2e-25 Identities = 116/144 (81%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 11644 ATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCC 11703 ||| | |||| | |||||||| || ||||| |||||||| || | ||| ||||| ||||| Sbjct 25162 ATGCATACCT-CATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCC 25220 Query 11704 TCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGC 11763 || ||| || | |||||| || | ||||| || ||||||||||| ||||| ||||| || Sbjct 25221 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGC 25280 Query 11764 TGCAAATGCTACTACTCTTTCTCC 11787 |||||| |||||||| | |||||| Sbjct 25281 TGCAAAAGCTACTACGCGTTCTCC 25304 >seq10457 Length=264043 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || || | ||| ||||||| || | || || Sbjct 10577 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGACCCCTCTTCTTC 10518 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||||||||||||||| ||||| |||||||| || || || || || ||||| || Sbjct 10517 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAGCA 10458 Query 11774 ACTACTCTTTCTCC 11787 | ||||| || || Sbjct 10457 ATCACTCTCTCACC 10444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468188697878160