Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq29343 120 4e-22 seq10457 114 2e-20 seq449 111 2e-19 seq35780 87.8 2e-12 >seq29343 Length=28090 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 25169 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25228 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 25229 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 25288 Query 36300 C 36300 | Sbjct 25289 C 25289 >seq10457 Length=264043 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| || || | ||| | Sbjct 10579 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGACCCCTCTTCT 10520 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 10519 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 10460 Query 36300 CAATAAGTCTCTCTCC 36315 |||| | |||||| || Sbjct 10459 CAATCACTCTCTCACC 10444 >seq449 Length=8651 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 9450 AAAATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTT 9509 |||| |||||| ||| | |||| | |||||||||| ||| ||||| ||||||||| Sbjct 2587 AAAAAAAAAATCATCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTT 2646 Query 9510 GATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGC 9569 || || | ||||| ||||||| ||||||| || |||||||| || || || |||||| Sbjct 2647 GACTGCAAGGTATACACAGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGC 2706 Query 9570 ATAACGACATGCACATCATAGAAA 9593 | ||||| ||||||||||||| Sbjct 2707 AAGACGACGGACACATCATAGAAA 2730 Score = 102 bits (112), Expect = 1e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || |||||| | | | ||| || ||||||||||||||||| ||| Sbjct 1305 TATTTTTTATTAAATGCTTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 1364 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 || |||| |||||| | || | | || |||||||| || | || || || || | Sbjct 1365 AAATAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 1424 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || || ||||| ||||| ||||| ||||| | ||| || || |||| | |||| | Sbjct 1425 TGAGTATCATAAATAATAAATCCACAGAACAGAAGAGCTCCGGCGGCAGCAAACACCAAC 1484 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 1485 TCTATTGTCTCACT 1498 >seq35780 Length=25771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || || Sbjct 16807 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 16866 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 16867 TCTTCCTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 16925 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 16926 CTCCAGGTAGATGGC 16940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657700651514760