Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq29343 120 4e-22 seq10457 120 4e-22 seq35780 100 4e-16 >seq29343 Length=28090 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || |||||||| ||||| |||||||| ||||||| || | || | Sbjct 25169 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25228 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 25229 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 25288 Query 50102 CAAC 50105 | || Sbjct 25289 CTAC 25292 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | || |||||||| || ||||| || || ||||| || || ||| Sbjct 23870 GACATGACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 23929 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 |||| || || ||||||||||| ||||| ||||| Sbjct 23930 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 23964 >seq10457 Length=264043 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| || || | ||| | Sbjct 10579 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGACCCCTCTTCT 10520 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||| | Sbjct 10519 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 10460 Query 50102 CAACAAGTCTCTCTCC 50117 ||| | |||||| || Sbjct 10459 CAATCACTCTCTCACC 10444 >seq35780 Length=25771 Score = 100 bits (110), Expect = 4e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || ||| Sbjct 16807 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 16866 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 16867 TCTTCCTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 16925 Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 16926 CTCCAGGTAGATGGCAAAAGCCCCGGGTC 16954 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||| ||||| || | ||||| || ||||| || |||||||| || || || | Sbjct 10828 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAAT 10887 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGG 79166 ||||||||||| ||||| || |||||||| || || |||||||| || Sbjct 10888 GGATTCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 10935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717753540897960