Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq49546 163 4e-35 seq24494 116 5e-21 >seq49546 Length=21408 Score = 163 bits (180), Expect = 4e-35 Identities = 224/309 (72%), Gaps = 3/309 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 5430 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5371 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||||||||| || |||||||| | |||| Sbjct 5370 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGGG 5311 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| |||| |||| || ||||| || || || || || || | ||| | || Sbjct 5310 AGCAGATAGCGTTTCCCATCAGTCCTTTCAGAGAGAAGGGTGCTCCAATCTCCACCATTG 5251 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | |||||||||||||| || || |||||||| || ||||| || | ||||| |||| Sbjct 5250 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCC 5192 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 5191 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 5132 Query 8977 TTTATTAAT 8985 ||||| || Sbjct 5131 ATTATTGAT 5123 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | ||| || || ||||| || || ||| ||| |||||||| || ||||||| Sbjct 3383 ATGAGCCTAGTCGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3324 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || |||||||||||||| | || || Sbjct 3323 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCGTACATCATCAAGCCTGGG 3264 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || ||||||| | ||| | ||| || | | ||||| Sbjct 3263 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 3204 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | |||| || || |||| || ||||||||||| |||||||| ||| Sbjct 3203 TAGATCATTTCCGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCGCCGTCAATCATC 3144 Query 9862 TG 9863 || Sbjct 3143 TG 3142 >seq24494 Length=17256 Score = 116 bits (128), Expect = 5e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8763 CTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGC 8822 |||| ||||| || |||||||||||||| | |||||||||||| || | | ||| | Sbjct 14157 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTTCCAAGGAGCC 14216 Query 8823 CTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8882 | || |||||||||||||| |||| ||| | ||||| || || || || | ||||| Sbjct 14217 CCTTCAGGGAAAACGGAGCTCCCATCTCCACCATGCTTTCTCCAAAAATACCATTGGGTT 14276 Query 8883 GGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGG 8941 |||| || || | || || || | || ||||||| ||| || |||||||| || ||| Sbjct 14277 GGGGTTTCTCAAGCAGCAAGCCTGGATAAAACTCCAGAGCATCAATGTCTCCATACAGG 14335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708016530878160