Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq43147 91.5 4e-13 seq10457 84.2 6e-11 >seq43147 Length=81232 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || || || | ||||| || || |||||||||| ||||||||||| Sbjct 81108 TACAAATGCCAAAGAGCTCTCTGCAAAGGGCGTGAAGATTTGGGATGCTAATGGATCACG 81049 Query 111449 TGACTTTCTAGATT--CAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| | | || || || || ||| | ||||||||| Sbjct 81048 TGAGTTCCTGGATAAGCAG--GGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTT 80991 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || || || ||| | |||||||| ||||| |||||| |||||| Sbjct 80990 TATGGTTTCCAGTGGAGGCACTTTGGAGCAGAATACAAAGATATGCAC 80943 >seq10457 Length=264043 Score = 84.2 bits (92), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 ||||| ||||||| ||||||||||| |||||||| || | ||| ||| || |||||| Sbjct 10456 ATTGCTTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 10515 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 || || || | | | ||||| || || || || || ||||| | |||||| ||||| Sbjct 10516 CTGAAGAAGAGGGGTCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 10575 Query 22618 GAGG 22621 |||| Sbjct 10576 GAGG 10579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302395248578198