Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5877 122 6e-23 seq2043 118 7e-22 seq346 107 1e-18 seq29452 98.7 7e-16 seq8003 86.0 4e-12 >seq5877 Length=385 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| || ||||| ||||| || |||||||| Sbjct 48 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAGAGTAGGTAGGGACAGTGGGAATCTCGT 107 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 108 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 142 >seq2043 Length=77240 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| |||||||||||||| || |||||||| Sbjct 22850 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGATAGGGACACTGGGAATCTCGT 22909 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||| ||||| Sbjct 22910 TCATCCATTCATACGCGTCACTAATTAGAAGACGA 22944 >seq346 Length=1143 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 97 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGT 156 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 157 GCCGGTATTTAGCCTTA 173 >seq29452 Length=37902 Score = 98.7 bits (108), Expect = 7e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | Sbjct 6616 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTGGT 6675 Query 20007 GGTAATATTTAGCC 20020 | ||||||||| Sbjct 6676 GCCGGTATTTAGCC 6689 >seq8003 Length=13837 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||| ||||||||||||||| || |||||||| ||||| || ||| || | Sbjct 990 AAGCCTGTTCTCTTGGCTGTGGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATATCAT 931 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||||||||| ||||| || Sbjct 930 TCATCCATTCATGCACTTCACTAATTGGATGATGA 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334712928403259