Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq49546 152 7e-32 seq24494 118 2e-21 >seq49546 Length=21408 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || || || || ||||| || Sbjct 3383 ATGAGCCTAGTCGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3324 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || ||||||||||| || || || Sbjct 3323 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCGTACATCATCAAGCCTGGG 3264 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 3263 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 3204 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | | |||| || || || || || || ||||||||||| |||||||| | | Sbjct 3203 TAGATCATTTCCGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCGCCGTCAATCATC 3144 Query 9967 TG 9968 || Sbjct 3143 TG 3142 Score = 147 bits (162), Expect = 3e-30 Identities = 210/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 5430 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5371 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| || ||||||||| | |||| Sbjct 5370 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGGG 5311 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| |||| |||| || ||||||| || || || || || | ||| | || Sbjct 5310 AGCAGATAGCGTTTCCCATCAGTCCTTTCAGAGAGAAGGGTGCTCCAATCTCCACCATTG 5251 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||||||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 5250 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 5191 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 5190 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5135 Score = 102 bits (112), Expect = 1e-16 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | |||| ||| | ||| Sbjct 4620 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAAAGTG 4561 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| || ||||| |||||||||||| Sbjct 4560 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCCGCAATTCGGTTCTGG 4501 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 4500 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 4443 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 4442 CACTTAAGTGTTGCACATA 4424 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| |||| ||||| ||||| | || |||| ||||| || ||| ||| | Sbjct 538 CTTACGTGTCGTACAGTTTTCCCCATAATATCCTGTCCTTGTACAGTCACACTCATACTG 479 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| ||| ||||||||||| |||| ||||| || |||| || ||||||||||| Sbjct 478 ATCAAATCCCGTTGTCATGCATACTCCTCTGTTCTGACATGGGTTTGAGCAGCAAGGGTT 419 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 418 GGCTGGAAT 410 >seq24494 Length=17256 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || ||||| || ||||||||||||||| | |||||||||||| || | | |||||| Sbjct 14159 CCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTTCCAAGGAGCCCC 14218 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||||||||| |||| ||| | ||||| || || || || || ||| | Sbjct 14219 TTCAGGGAAAACGGAGCTCCCATCTCCACCATGCTTTCTCCAAAAATACCATTGGGTTGG 14278 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | || | || | ||| || | ||| ||||| ||| || Sbjct 14279 GGTTTCTCAAGCAGCAAGCCTGGATAAAACTCCAGAGCATCAATGTCTCCATACAGGTCT 14338 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 14339 TCCAGCTCTGCTGCCTTCTCTTCCTCGCCTGCA 14371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723208824672600