Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq22742 113 3e-19 seq40792 111 1e-18 seq42113 96.9 3e-14 >seq22742 Length=2510 Score = 113 bits (124), Expect = 3e-19 Identities = 676/1069 (63%), Gaps = 32/1069 (3%) Strand=Plus/Plus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 ||||| | || || || ||||| |||||||| | ||||| ||||| || || || |||| Sbjct 860 CGGCACTGACGTTCAGGATACCGTTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 919 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | | || || ||||| ||| | | |||| | ||||| || || || | Sbjct 920 CTCCGCGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 979 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGA 517434 | || | || ||||||||| | | |||| || | ||| | | || || ||||| Sbjct 980 TCGTCATAGCTCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGA 1037 Query 517435 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 517493 || || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 1038 GTAGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAG 1096 Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 1097 CAGTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAGCA 1156 Query 517554 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | || || | || ||| | | || | || ||||||||||| | |||||| | Sbjct 1157 GCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGC 1216 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 |||| |||||||| |||||||| || | | | || || | |||||||||||| || | Sbjct 1217 CATAAGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTACCATTGAAGAAGT 1276 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 || || | | | ||| || ||||| | || || || || | || || || | Sbjct 1277 CCTGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACTATCTCCT 1336 Query 517734 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 | | ||| || || || || | ||| | | | || || || || || || Sbjct 1337 GGATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTAC 1396 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGACATTAT 517850 | | || | || | | || || ||||| || | ||||| || ||| || Sbjct 1397 CACGGAAGAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTG----TAG 1452 Query 517851 AA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATA 517907 || ||||| || ||| | | || || | ||||| ||| ||| || ||||| || | Sbjct 1453 AAGTCAATGCCCTCGTAGAGGGAGTCGATCTCAATGCTAGCTTGTGTAGAAGAGCTGAGA 1512 Query 517908 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-- 517965 ||| || || || | ||||| ||||| | |||| | | || | ||| ||| Sbjct 1513 GTG--CGCTTTGCCCTCTCACAAGCTGTACGCAGTCGCCTCACTGC--TCGCTTGTTGCC 1568 Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGA 518023 | | || || | || | |||||| ||||| |||| ||| | || | || Sbjct 1569 AGCAATGTCGCGCTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATGCGG 1626 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| || || || |||| | || | || | || | | || | || | Sbjct 1627 TTGTCAAAGTCCTCTCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATG 1686 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||||| |||| | | | | |||||| || || || |||| ||||| || || Sbjct 1687 CCATCCTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGC 1746 Query 518144 ACATTCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 |||||| | ||| | || || || || | ||||| || | |||||| || Sbjct 1747 ACATTCTTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCGATAGCAGCTGCT 1806 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 || || || || ||||| | || |||||||| |||| || | || |||||||||||| Sbjct 1807 GTGGGCTCGTTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTAGTG 1866 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || | || || || || || || ||||| || || || || |||| Sbjct 1867 GCCTGGCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCAT 1915 >seq40792 Length=30162 Score = 111 bits (122), Expect = 1e-18 Identities = 360/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 2128 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 2069 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| || |||| ||| | ||| || ||||||| || || ||||| | || || Sbjct 2068 AAATCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACGAT 2010 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| ||||| || ||||| | |||| | | ||||| || || || || Sbjct 2009 GTCATGGATCTGCGATTTGTCGAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCGAG 1950 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 517847 | | |||| ||| | || ||||| || |||||| ||| | ||| | Sbjct 1949 GGTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTA--ATGGACGTG 1892 Query 517848 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 || || ||||| || || | | |||||||| |||||| | | || || || || Sbjct 1891 TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTTGACGAC 1832 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGA 517962 || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 1831 AGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCG 1772 Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022 |||| ||| | |||| || | |||||| || ||| | | || | || Sbjct 1771 CTGAT----GTCTTTCTTATGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCG 1716 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || || || ||||| || ||||| | ||| | |||| || | | | || | || | Sbjct 1715 GTTGTCGAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGAT 1656 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 |||||||||| || || || | |||||| ||| ||||| || | ||||| ||||| Sbjct 1655 GCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAG 1596 Query 518143 TACATTCATTTC 518154 |||||| |||| Sbjct 1595 AACATTCCTTTC 1584 Score = 109 bits (120), Expect = 4e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| |||||| |||| | || || ||||| || |||| Sbjct 482 CAAAAACTGTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCGCCGATCAACC 423 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 422 TCTCTGTGTCTGTGAAAGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 363 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || || | ||| ||||||| ||||| | | || || || | ||||| Sbjct 362 TGATTTCCACCTTCCCGTGTTGGAATACACCAACACAGGAATAGGTAGTGCCAAGATCAA 303 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 302 TTCCGACAGC 293 >seq42113 Length=46900 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 25690 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 25749 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 25750 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 25809 Query 367113 TGATGG 367118 ||||| Sbjct 25810 CGATGG 25815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777974568780634