Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq40792 122 7e-22 seq22742 102 7e-16 >seq40792 Length=30162 Score = 122 bits (134), Expect = 7e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || ||| | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 1323 GTTACTAACGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1382 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || ||||||||||| || || ||| Sbjct 1383 AAAGATGCTGGAACCATTGCAGGGCTCAACGTACTGCGAATTATCAATGAGCCAACAGCT 1442 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 1443 GCTGCGATAGCCTATGGCCTAGACAAA 1469 Score = 91.5 bits (100), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || || || ||| ||||||||||| | ||| | || || Sbjct 292 AGCTGTCGGAATTGATCTTGGCACTACCTATTCCTGTGTTGGTGTATTCCAACACGGGAA 351 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || |||||| | || || ||| || ||| ||||||| Sbjct 352 GGTGGAAATCATTGCCAATGACCAGGGTAACCGGACCACGCCAAGCTACGTTGCTTTCAC 411 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || | || ||||| ||||| | |||| || || ||||| ||| Sbjct 412 AGACACAGAGAGGTTGATCGGCGATGCTGCAAAGAACCAAGTTGCAATG--AATCCAACC 469 Query 550169 AATACTATTTTTG 550181 ||||| |||||| Sbjct 470 AATACAGTTTTTG 482 Score = 89.7 bits (98), Expect = 4e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 3053 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3112 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || ||||||||| ||||| ||||| Sbjct 3113 AATGGCATCTTGAATGTGTCTGCTGTGGATAA 3144 >seq22742 Length=2510 Score = 102 bits (112), Expect = 7e-16 Identities = 350/542 (65%), Gaps = 3/542 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || |||||||| || || ||||| | || |||| ||| Sbjct 2321 GCAATCGGCATCGACTTGGGCACCACATACTCCTGCGTGGGTGTCTTTCAGCATGGCAAA 2262 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || || || | ||||| Sbjct 2261 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTACGTGGCCTTCACC 2202 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | |||||||| || || | || | || || |||||||| Sbjct 2201 GACACAGAGCGCCTCATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 2142 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | || || | | | | |||| | || || ||| | Sbjct 2141 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCT 2082 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || |||||||| ||||| |||| | || || | ||| || || | | ||| Sbjct 2081 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGTGCAAGTG 2022 Query 550292 ACTCATGAAGGATCTGTTAA-ACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | ||| | || || | ||| ||||| | || || ||||| | | Sbjct 2021 GAGTACAAGGGAGAGATGAAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCCTTAC 1963 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || ||||| | | ||| || | | | || | | || | |||| || || || Sbjct 1962 CAAGATGAAGGAGATAGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCATCAC 1903 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || || || || || |||||||| || || || || |||||||||||||| || | Sbjct 1902 AGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACTAAAGATGCTGGCACCATCAC 1843 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| |||||||| | ||||||||||| || || || || ||||| | || ||||| || Sbjct 1842 TGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATCGCCTATGG-CT 1784 Query 550531 TG 550532 || Sbjct 1783 TG 1782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026261010855610